Result : Q0VQU6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ribosome modulation factor (RMF) |
| NCBI Accession ID | |
| Organism | Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MKRQKRNKDDRAYNRGYNAGLDGKSREDCPFGTLQARTNWMGGWREGRTDFAHGMLGVASIQNLKNIG |
| Source of smORF | Swiss-Prot |
| Function | During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes). {ECO:0000255|HAMAP-Rule:MF_00919}. |
| Pubmed ID | 16878126 |
| Domain | CDD:420038 |
| Functional Category | Others |
| Uniprot ID | Q0VQU6 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 64
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1142289 | 1142495 | - | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 2 | 2266097 | 2266303 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 3 | 1961968 | 1962174 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 4 | 1790346 | 1790555 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 5 | 1452753 | 1452965 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 6 | 2180537 | 2180710 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 7 | 2696241 | 2696450 | + | NZ_CP020931.1 | Marinobacter salarius |
| 8 | 1613257 | 1613469 | + | NZ_CP017715.1 | Marinobacter salinus |
| 9 | 1898641 | 1898814 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 10 | 1319695 | 1319901 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 11 | 2052330 | 2052506 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 12 | 1705756 | 1705929 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 13 | 1376864 | 1377061 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 14 | 3122739 | 3122948 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 15 | 2400592 | 2400798 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 16 | 1633211 | 1633423 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 17 | 2568037 | 2568243 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 18 | 2361375 | 2361581 | + | NZ_CP043420.1 | Kushneria phosphatilytica |
| 19 | 635500 | 635673 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 20 | 1173391 | 1173600 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 21 | 2801886 | 2802092 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 22 | 2650028 | 2650234 | - | NZ_CP048812.1 | Halomonas socia |
| 23 | 1563451 | 1563657 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 24 | 2830218 | 2830424 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 25 | 2185734 | 2185940 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 26 | 1540042 | 1540251 | - | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 27 | 4687009 | 4687218 | + | NZ_CP059082.1 | Halomonas titanicae |
| 28 | 1670661 | 1670867 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 29 | 1278178 | 1278351 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 30 | 2094951 | 2095124 | + | NZ_CP040990.1 | Vibrio furnissii |
| 31 | 1576581 | 1576787 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 32 | 1826247 | 1826462 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 33 | 3805091 | 3805306 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 34 | 1831658 | 1831873 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 35 | 1897238 | 1897453 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 36 | 4269356 | 4269571 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 37 | 3113827 | 3114042 | + | NZ_CP009365.1 | Pseudomonas soli |
| 38 | 4196324 | 4196527 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 39 | 1154928 | 1155137 | - | NZ_AP022843.1 | Halomonas hydrothermalis |
| 40 | 1234787 | 1234996 | - | NZ_CP065135.1 | Halomonas venusta |
| 41 | 1727371 | 1727544 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 42 | 1349016 | 1349222 | - | NZ_CP013106.1 | Halomonas huangheensis |
| 43 | 1467732 | 1467905 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 44 | 159427 | 159636 | + | NZ_CP021323.1 | Kushneria konosiri |
| 45 | 3184989 | 3185198 | - | NZ_CP021358.1 | Kushneria marisflavi |
| 46 | 1666969 | 1667142 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 47 | 1259491 | 1259664 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 48 | 2127962 | 2128156 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 49 | 2141753 | 2141929 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 50 | 1392992 | 1393162 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 51 | 2318279 | 2318452 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 52 | 1264492 | 1264665 | + | NZ_AP019657.1 | Vibrio ponticus |
| 53 | 1515733 | 1515906 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 54 | 1858546 | 1858719 | + | NZ_CP046268.1 | Vibrio spartinae |
| 55 | 1627465 | 1627638 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 56 | 2596719 | 2596895 | - | NZ_CP028897.1 | Dongshaea marina |
| 57 | 419765 | 419938 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 58 | 2176086 | 2176262 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 59 | 1242857 | 1243033 | + | NZ_CP014322.1 | Alteromonas addita |
| 60 | 1836243 | 1836419 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 61 | 2245263 | 2245439 | + | NZ_CP008849.1 | Alteromonas australica |
| 62 | 1390011 | 1390184 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 63 | 2322050 | 2322238 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 64 | 1752684 | 1752860 | - | NZ_CP040449.1 | Aeromonas simiae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008260.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01180.23 | 0.7 | 45 | 116 | opposite-strand | Dihydroorotate dehydrogenase |
| 2 | PF01170.20 | 0.95 | 61 | 469 | opposite-strand | Putative RNA methylase family UPF0020 |
++ More..