Result : Q0RRR3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CT573213.2 |
| Organism | Frankia alni (strain ACN14a) |
| Left | 1164846 |
| Right | 1165115 |
| Strand | + |
| Nucleotide Sequence | GTGATGGCTGTCGCTACCGCGGACGAGCTGCGGAGCCTGTCGGGCGACGAGCTCGTCGACAAGCTCCGGGAAGCCAAGGAGGAGCTGTTCAACCTCCGGTTCCAGGCGGCGACCGGACAGCTTTCCAACAACCGGCGGCTGCGGGCCGTCCGGCGTGACATCGCCAAGATCTACACGGTGATGCGCGAACGGGAGCTGGGTATCACCGGCGATCCGGCGCTGGTCGCCGGTGCGGCGGACGATGACGCGACGCAGTCGGAACGGGCGTGA |
| Sequence | MMAVATADELRSLSGDELVDKLREAKEELFNLRFQAATGQLSNNRRLRAVRRDIAKIYTVMRERELGITGDPALVAGAADDDATQSERA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 17151343 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q0RRR3 |
| ORF Length (Amino Acid) | 89 |
++ More..
| Conservation Analysis |
No. of Species: 248
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1164846 | 1165115 | + | NC_008278.1 | Frankia alni ACN14a |
| 2 | 682410 | 682676 | + | NC_007777.1 | Frankia casuarinae |
| 3 | 7660614 | 7660862 | - | NC_014666.1 | Frankia inefficax |
| 4 | 564747 | 564974 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 5 | 628442 | 628696 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 6 | 650614 | 650868 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 7 | 2898218 | 2898448 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 8 | 11103238 | 11103486 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 9 | 1056785 | 1057021 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 10 | 2940745 | 2940981 | + | NZ_AP022562.1 | Mycobacterium novum |
| 11 | 3542179 | 3542415 | - | NC_015576.1 | Mycolicibacter sinensis |
| 12 | 421971 | 422204 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 13 | 5233967 | 5234194 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 14 | 1616989 | 1617216 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 15 | 6771297 | 6771524 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 16 | 4056954 | 4057184 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 17 | 272488 | 272721 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 18 | 3747161 | 3747394 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 19 | 3274248 | 3274481 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 20 | 3992142 | 3992375 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 21 | 3516973 | 3517203 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 22 | 258363 | 258608 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 23 | 3523578 | 3523814 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 24 | 636332 | 636553 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 25 | 270800 | 271021 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 26 | 2720246 | 2720473 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 27 | 1666971 | 1667204 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 28 | 2454406 | 2454648 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 29 | 3539215 | 3539442 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 30 | 1273009 | 1273242 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 31 | 2506789 | 2507016 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 32 | 603924 | 604157 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 33 | 5475694 | 5475915 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 34 | 1123703 | 1123924 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 35 | 4720653 | 4720886 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 36 | 6228162 | 6228407 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 37 | 5531951 | 5532184 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 38 | 3632450 | 3632680 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 39 | 3926869 | 3927099 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 40 | 8751076 | 8751324 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 41 | 4489236 | 4489463 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 42 | 3568635 | 3568865 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 43 | 4373366 | 4373596 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 44 | 1959035 | 1959265 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 45 | 1404099 | 1404332 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 46 | 2234157 | 2234390 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 47 | 4115546 | 4115782 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 48 | 3777450 | 3777686 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 49 | 1004000 | 1004221 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 50 | 519106 | 519351 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 51 | 1887739 | 1887972 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 52 | 2939646 | 2939885 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 53 | 5887433 | 5887660 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 54 | 3979228 | 3979455 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 55 | 6024229 | 6024468 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 56 | 2471743 | 2471970 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 57 | 2837122 | 2837343 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 58 | 767100 | 767336 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 59 | 6445004 | 6445231 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 60 | 5334844 | 5335077 | + | NZ_CP033972.1 | Gordonia insulae |
| 61 | 566977 | 567207 | + | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 62 | 1162779 | 1163012 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 63 | 4688227 | 4688460 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 64 | 2422543 | 2422770 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 65 | 2531429 | 2531659 | - | NZ_CP015449.1 | Dietzia lutea |
| 66 | 5781417 | 5781659 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 67 | 996535 | 996771 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 68 | 2587923 | 2588150 | - | NZ_CP015961.1 | Dietzia timorensis |
| 69 | 5186207 | 5186434 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 70 | 2725264 | 2725494 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 71 | 536376 | 536606 | + | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 72 | 1130450 | 1130683 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 73 | 1583641 | 1583892 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 74 | 5542129 | 5542350 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 75 | 461646 | 461876 | + | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 76 | 4405097 | 4405324 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 77 | 3912608 | 3912838 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 78 | 565757 | 565987 | + | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 79 | 713131 | 713361 | + | NZ_AP017369.1 | Corynebacterium suranareeae |
| 80 | 2038495 | 2038725 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 81 | 2055195 | 2055425 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 82 | 482191 | 482430 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 83 | 556521 | 556751 | + | NZ_CP015622.1 | Corynebacterium crudilactis |
| 84 | 3573692 | 3573925 | - | NZ_CP027433.1 | Gordonia iterans |
| 85 | 2406362 | 2406589 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 86 | 3870724 | 3870954 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 87 | 2700651 | 2700878 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 88 | 2995571 | 2995807 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 89 | 1255887 | 1256129 | + | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 90 | 955358 | 955597 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 91 | 4985884 | 4986111 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 92 | 370163 | 370393 | + | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 93 | 473731 | 473961 | + | NZ_LR738855.1 | Corynebacterium rouxii |
| 94 | 1907797 | 1908027 | + | NZ_LT906443.1 | Corynebacterium ulcerans |
| 95 | 388649 | 388879 | + | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 96 | 4035918 | 4036151 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 97 | 3693336 | 3693572 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 98 | 4006303 | 4006530 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 99 | 1989801 | 1990037 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 100 | 4386401 | 4386628 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 101 | 2251698 | 2251931 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 102 | 2464260 | 2464487 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 103 | 2245727 | 2245966 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 104 | 2183697 | 2183942 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 105 | 1295190 | 1295420 | + | NZ_LS483464.1 | Corynebacterium renale |
| 106 | 2083385 | 2083618 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 107 | 2139161 | 2139391 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 108 | 3330126 | 3330353 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 109 | 1198150 | 1198377 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 110 | 630963 | 631199 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 111 | 9214345 | 9214593 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 112 | 644673 | 644903 | + | NZ_CP016353.1 | Prauserella marina |
| 113 | 772233 | 772466 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 114 | 1481824 | 1482051 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 115 | 4557304 | 4557531 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 116 | 4691149 | 4691376 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 117 | 4436872 | 4437099 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 118 | 2090835 | 2091065 | - | NZ_LT906473.1 | Corynebacterium cystitidis |
| 119 | 805532 | 805759 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 120 | 820691 | 820918 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 121 | 1534906 | 1535139 | - | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 122 | 1215855 | 1216112 | + | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 123 | 341536 | 341766 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 124 | 1215654 | 1215890 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 125 | 398061 | 398291 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 126 | 1722913 | 1723143 | - | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 127 | 902594 | 902833 | + | NZ_AP023396.1 | Nocardia wallacei |
| 128 | 1054669 | 1054908 | + | NZ_AP017900.1 | Nocardia seriolae |
| 129 | 4043986 | 4044222 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 130 | 3393455 | 3393688 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 131 | 463748 | 463978 | + | NZ_CP011542.1 | Corynebacterium mustelae |
| 132 | 650674 | 650907 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 133 | 2567669 | 2567905 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 134 | 1278938 | 1279177 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 135 | 368701 | 368940 | + | NZ_CP019688.1 | Corynebacterium glaucum |
| 136 | 628851 | 629081 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 137 | 538038 | 538268 | + | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 138 | 4907560 | 4907814 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 139 | 388701 | 388931 | + | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 140 | 367577 | 367807 | + | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 141 | 4308995 | 4309240 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 142 | 2952936 | 2953172 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 143 | 4377316 | 4377552 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 144 | 5931085 | 5931315 | - | NZ_AP023355.1 | Actinocatenispora thailandica |
| 145 | 363532 | 363762 | + | NZ_CP011311.1 | Corynebacterium camporealensis |
| 146 | 1756954 | 1757211 | - | NZ_CP044548.2 | Janibacter melonis |
| 147 | 414861 | 415091 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 148 | 2074785 | 2075012 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 149 | 344339 | 344569 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 150 | 433021 | 433251 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 151 | 8289361 | 8289597 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 152 | 373274 | 373522 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 153 | 2302305 | 2302541 | - | NZ_LT906453.1 | Dermatophilus congolensis |
| 154 | 2850499 | 2850741 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 155 | 403386 | 403694 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 156 | 2012442 | 2012675 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 157 | 777103 | 777333 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 158 | 2297833 | 2298063 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 159 | 489245 | 489475 | - | NZ_CP038157.1 | Corynebacterium sanguinis |
| 160 | 471284 | 471514 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 161 | 2267462 | 2267692 | - | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 162 | 303920 | 304159 | + | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 163 | 1086514 | 1086738 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 164 | 464528 | 464758 | + | NZ_CP009246.1 | Corynebacterium flavescens |
| 165 | 474849 | 475079 | + | NZ_LT906467.1 | Corynebacterium imitans |
| 166 | 3230752 | 3230997 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 167 | 2306397 | 2306627 | - | NZ_CP009249.1 | Corynebacterium phocae |
| 168 | 428199 | 428429 | + | NZ_CP039247.1 | Corynebacterium endometrii |
| 169 | 969547 | 969783 | + | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 170 | 1128211 | 1128441 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 171 | 7126240 | 7126482 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 172 | 1400925 | 1401152 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 173 | 551102 | 551332 | + | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 174 | 1206864 | 1207103 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 175 | 3657683 | 3657973 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 176 | 397745 | 397966 | + | NZ_CP049257.1 | Nocardioides anomalus |
| 177 | 4432369 | 4432611 | - | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 178 | 1111043 | 1111282 | + | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 179 | 1808692 | 1808934 | + | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 180 | 2214404 | 2214631 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 181 | 540247 | 540477 | + | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 182 | 911519 | 911758 | + | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 183 | 496160 | 496390 | + | NZ_CP009251.1 | Corynebacterium stationis |
| 184 | 2802127 | 2802366 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 185 | 2591164 | 2591397 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 186 | 1709821 | 1710084 | - | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 187 | 3897756 | 3897977 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 188 | 375430 | 375660 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 189 | 498488 | 498718 | + | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 190 | 1057062 | 1057301 | + | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 191 | 7627152 | 7627394 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 192 | 850861 | 851091 | - | NZ_CP038436.1 | Nocardioides seonyuensis |
| 193 | 4307377 | 4307613 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 194 | 2219318 | 2219557 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 195 | 1334547 | 1334783 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 196 | 1453128 | 1453364 | - | NZ_CP041146.1 | Nocardioides humi |
| 197 | 3498761 | 3499003 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 198 | 958803 | 959042 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 199 | 27135 | 27368 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 200 | 4554881 | 4555123 | - | NZ_CP022752.1 | Actinopolyspora erythraea |
| 201 | 2580896 | 2581132 | - | NZ_CP041091.1 | Nocardioides sambongensis |
| 202 | 1172718 | 1172969 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 203 | 1685572 | 1685823 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 204 | 1726286 | 1726525 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 205 | 403919 | 404149 | + | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 206 | 444195 | 444425 | + | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 207 | 719277 | 719516 | + | NC_015588.1 | Isoptericola variabilis 225 |
| 208 | 436994 | 437224 | + | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 209 | 532768 | 532998 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 210 | 1900181 | 1900432 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 211 | 1992190 | 1992441 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 212 | 616842 | 617099 | + | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 213 | 2634665 | 2634898 | + | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 214 | 3296380 | 3296619 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 215 | 1721899 | 1722168 | + | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 216 | 697426 | 697662 | + | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 217 | 1395167 | 1395430 | - | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 218 | 1432295 | 1432558 | - | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 219 | 1686943 | 1687194 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 220 | 467134 | 467391 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 221 | 2424593 | 2424826 | - | NZ_LR134406.1 | Arachnia propionica |
| 222 | 1665020 | 1665256 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 223 | 1062996 | 1063229 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 224 | 4332518 | 4332760 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 225 | 3506222 | 3506458 | + | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 226 | 644346 | 644585 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 227 | 1618726 | 1618971 | - | NZ_LR134357.1 | Actinomyces israelii |
| 228 | 619270 | 619515 | + | NZ_CP066802.1 | Actinomyces weissii |
| 229 | 1939593 | 1939814 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 230 | 2006920 | 2007141 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 231 | 1712852 | 1713097 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 232 | 1544152 | 1544385 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 233 | 2290089 | 2290310 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 234 | 1279427 | 1279675 | + | NZ_LR134363.1 | Actinomyces slackii |
| 235 | 418879 | 419100 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 236 | 566493 | 566738 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 237 | 2768847 | 2769095 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 238 | 3127612 | 3127857 | - | NZ_CP066049.1 | Actinomyces naeslundii |
| 239 | 3490466 | 3490708 | - | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 240 | 3411885 | 3412130 | + | NZ_LR134477.1 | Actinomyces viscosus |
| 241 | 2586028 | 2586267 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 242 | 698698 | 698931 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 243 | 1295155 | 1295400 | - | NZ_LR134350.1 | Actinomyces howellii |
| 244 | 1737951 | 1738196 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 245 | 2050633 | 2050878 | - | NZ_CP066060.1 | Actinomyces oris |
| 246 | 2215013 | 2215261 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 247 | 5699229 | 5699450 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 248 | 507407 | 507631 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008278.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03947.20 | 1.0 | 247 | 1972 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 2 | PF00181.25 | 1.0 | 247 | 1972 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 3 | PF00203.23 | 1.0 | 248 | 1675.5 | same-strand | Ribosomal protein S19 |
| 4 | PF00237.21 | 1.0 | 248 | 1250.0 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00189.22 | 1.0 | 248 | 423.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 6 | PF07650.19 | 1.0 | 248 | 423.0 | same-strand | KH domain |
| 7 | PF00252.20 | 1.0 | 248 | 0.0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00366.22 | 1.0 | 248 | 0.0 | same-strand | Ribosomal protein S17 |
++ More..