ProsmORF-pred
Result : Q0I9N9
Protein Information
Information Type Description
Protein name 30S ribosomal protein S15
NCBI Accession ID CP000435.1
Organism Synechococcus sp. (strain CC9311)
Left 1491763
Right 1492032
Strand +
Nucleotide Sequence ATGTCGCTCGATACAACTGAAAAGCAGCAACTCATCAACAGTCACCAAACCCATGCCACCGACACCGGATCGGCAGAGGTTCAGGTCGCCATGCTGAGCGAGCGCATCTCCAAGCTCAGCAGCCACCTACAGCAAAACATCCACGACTATTCATCCCGCCAGGGTCTGCTGAAGATGATTGGCCGTCGCAAGCGTCTGCTTGGTTACGTCCGAGGCAAAAGCGAGCAGCGCTACAGCGATCTCATTTCTAAGCTTGGAATCCGCGGCTAA
Sequence MSLDTTEKQQLINSHQTHATDTGSAEVQVAMLSERISKLSSHLQQNIHDYSSRQGLLKMIGRRKRLLGYVRGKSEQRYSDLISKLGIRG
Source of smORF Swiss-Prot
Function One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01343}.; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. {ECO:0000255|HAMAP-Rule:MF_01343}.
Pubmed ID 16938853
Domain CDD:412325
Functional Category Ribosomal_protein
Uniprot ID Q0I9N9
ORF Length (Amino Acid) 89
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 421
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 461370 461639 - NC_019675.1 Cyanobium gracile PCC 6307
2 684948 685217 - NC_005042.1 Prochlorococcus marinus subsp. marinus str. CCMP1375
3 5420513 5420782 + NZ_CP021983.2 Halomicronema hongdechloris C2206
4 3191260 3191529 + NC_014501.1 Gloeothece verrucosa PCC 7822
5 5028212 5028481 + NZ_CP024785.1 Nostoc flagelliforme CCNUN1
6 5477611 5477880 + NC_009925.1 Acaryochloris marina MBIC11017
7 856113 856382 + NC_010628.1 Nostoc punctiforme PCC 73102
8 5970891 5971160 + NZ_CP031941.1 Nostoc sphaeroides
9 1838981 1839250 - NC_011729.1 Gloeothece citriformis PCC 7424
10 749400 749669 - NZ_CP047242.1 Trichormus variabilis 0441
11 4129016 4129285 - NZ_CP054698.1 Nostoc edaphicum CCNP1411
12 3959686 3959955 - NC_014248.1 'Nostoc azollae' 0708
13 2613114 2613383 + NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1
14 5431613 5431882 - NC_019771.1 Anabaena cylindrica PCC 7122
15 2312590 2312859 + NC_019695.1 Chroococcidiopsis thermalis PCC 7203
16 7123321 7123590 + NC_019693.1 Oscillatoria acuminata PCC 6304
17 560927 561196 - NZ_CP018092.1 Synechococcus lividus PCC 6715
18 4695392 4695661 - NC_019753.1 Crinalium epipsammum PCC 9333
19 1364852 1365121 + NZ_AP018202.1 Thermostichus vulcanus NIES-2134
20 647419 647688 - NC_019729.1 Oscillatoria nigro-viridis PCC 7112
21 1658267 1658536 + NC_019689.1 Pleurocapsa sp. PCC 7327
22 4854275 4854544 - NC_019748.1 Stanieria cyanosphaera PCC 7437
23 3492219 3492488 - NC_019751.1 Calothrix sp. PCC 6303
24 556742 557011 + NC_010296.1 Microcystis aeruginosa NIES-843
25 1251828 1252097 + NC_004113.1 Thermosynechococcus vestitus BP-1
26 3069374 3069643 + NC_011831.1 Chloroflexus aggregans DSM 9485
27 6301373 6301642 - NC_017672.3 Paenibacillus mucilaginosus K02
28 436809 437078 - NZ_CP042326.1 Euhalothece natronophila Z-M001
29 2991470 2991739 - NC_019776.1 Cyanobacterium aponinum PCC 10605
30 2793076 2793345 - NC_019780.1 Dactylococcopsis salina PCC 8305
31 4786518 4786787 + NZ_AP014638.1 Leptolyngbya boryana IAM M-101
32 1131848 1132117 + NZ_CP033433.1 Cohnella candidum
33 872290 872559 + NZ_CP035492.1 Paenibacillus protaetiae
34 3368899 3369168 - NZ_CP009286.1 Paenibacillus stellifer
35 4240435 4240704 - NZ_AP019400.1 Cohnella abietis
36 3181526 3181795 - NZ_CP004078.1 Paenibacillus sabinae T27
37 6182921 6183190 + NZ_CP054614.1 Paenibacillus barcinonensis
38 4224910 4225179 - NC_005125.1 Gloeobacter violaceus PCC 7421
39 5570595 5570864 + NZ_CP016809.1 Paenibacillus ihbetae
40 1159497 1159766 + NZ_CP045293.1 Paenibacillus guangzhouensis
41 4658353 4658622 + NZ_CP011058.1 Paenibacillus beijingensis
42 1153010 1153279 + NZ_AP018724.1 Sulfurivermis fontis
43 1317133 1317402 + NZ_CP013652.1 Paenibacillus naphthalenovorans
44 3699477 3699746 - NZ_CP009288.1 Paenibacillus durus
45 2439108 2439377 - NC_007484.1 Nitrosococcus oceani ATCC 19707
46 1164704 1164976 + NZ_CP053828.1 Campylobacter hyointestinalis subsp. lawsonii
47 6235366 6235635 + NZ_CP045295.1 Paenibacillus cellulositrophicus
48 3910631 3910900 - NZ_CP034248.1 Paenibacillus lentus
49 4697142 4697411 - NZ_CP026520.1 Paenibacillus chitinolyticus
50 2138129 2138398 + NZ_CP042593.1 Bacillus dafuensis
51 1563818 1564087 - NZ_LR134242.1 Staphylococcus warneri
52 2416813 2417082 + NC_022737.1 Staphylococcus pasteuri SP1
53 1255711 1255980 + NC_007645.1 Hahella chejuensis KCTC 2396
54 847604 847870 + NC_011899.1 Halothermothrix orenii H 168
55 2881496 2881765 + NZ_CP048209.1 Paenibacillus lycopersici
56 822342 822611 - NZ_CP048286.1 Paenibacillus rhizovicinus
57 3661282 3661551 + NZ_CP011388.1 Paenibacillus swuensis
58 6088531 6088800 - NZ_CP048429.1 Paenibacillus jilunlii
59 4155843 4156112 - NZ_CP009287.1 Paenibacillus graminis
60 6228080 6228349 - NZ_CP068595.1 Paenibacillus sonchi
61 4687598 4687867 - NZ_LN831776.1 Paenibacillus riograndensis SBR5
62 4876563 4876832 - NZ_CP009285.1 Paenibacillus borealis
63 3039583 3039852 + NC_005027.1 Rhodopirellula baltica SH 1
64 1341114 1341383 + NZ_CP008876.1 Terribacillus goriensis
65 1102472 1102744 + NZ_CP059443.1 Campylobacter fetus
66 1127103 1127372 + NZ_CP014167.1 Paenibacillus yonginensis
67 2521193 2521462 - NZ_CP019659.1 Paenibacillus larvae subsp. larvae
68 4894550 4894819 - NZ_CP041305.1 Cytobacillus ciccensis
69 4404058 4404327 + NC_022600.1 Gloeobacter kilaueensis JS1
70 1340073 1340342 + NZ_AP018725.1 Sulfuriflexus mobilis
71 889731 890003 + NZ_CP012196.1 Campylobacter gracilis
72 1128603 1128872 + NZ_CP013114.1 Staphylococcus equorum
73 531338 531577 + NZ_CP048436.1 Flavonifractor plautii
74 1209009 1209278 - NC_011978.1 Thermotoga neapolitana DSM 4359
75 1700777 1701046 + NC_014761.1 Oceanithermus profundus DSM 14977
76 81310 81579 - NZ_CP062147.1 Komagataeibacter hansenii
77 1068578 1068847 - NZ_LN606600.1 Acetobacter senegalensis
78 2240926 2241195 + NZ_CP053989.1 Niallia circulans
79 4098896 4099165 - NZ_CP009428.1 Paenibacillus odorifer
80 3651642 3651911 - NZ_CP021780.1 Paenibacillus donghaensis
81 3376351 3376620 + NZ_CP034437.1 Paenibacillus albus
82 2177017 2177286 - NC_014216.1 Desulfurivibrio alkaliphilus AHT 2
83 2502327 2502596 - NZ_CP018866.1 Sutcliffiella cohnii
84 1835922 1836191 + NC_022524.1 Bacillus infantis NRRL B-14911
85 1072139 1072411 + NZ_CP015578.1 Campylobacter lanienae NCTC 13004
86 451399 451668 + NZ_CP040508.1 Rhodoluna limnophila
87 53191 53460 - NZ_CP017786.1 Bacillus xiamenensis
88 1647023 1647292 + NZ_CP011150.1 Bacillus altitudinis
89 3661307 3661576 - NZ_CP043404.1 Bacillus safensis
90 1424888 1425154 + NZ_CP031115.1 Rubrobacter indicoceani
91 174270 174539 + NZ_CP008802.1 Actinotignum schaalii
92 2308761 2309030 + NZ_CP038033.1 Nitrosococcus wardiae
93 692345 692566 - NZ_CP027226.1 Fastidiosipila sanguinis
94 715138 715407 - NZ_AP014648.1 Methyloceanibacter caenitepidi
95 1660007 1660276 - NZ_CP008724.1 Staphylococcus xylosus
96 3924084 3924353 - NZ_CP024035.1 Priestia aryabhattai
97 2835979 2836248 + NC_013960.1 Nitrosococcus halophilus Nc 4
98 1104374 1104643 + NZ_CP012152.1 Anoxybacillus gonensis
99 383443 383712 + NZ_CP022544.1 Bifidobacterium pseudolongum
100 79274 79543 - NZ_CP022983.1 Cytobacillus kochii
101 3989620 3989889 - NZ_CP034346.1 Paenibacillus lutimineralis
102 4730339 4730608 + NZ_CP041217.1 Saccharibacillus brassicae
103 1111517 1111786 + NZ_CP031423.1 Microbacterium lemovicicum
104 2312296 2312559 - NZ_CP020559.1 Clostridium formicaceticum
105 2890597 2890866 + NZ_CP043611.1 Paenibacillus antarcticus
106 963926 964198 + NZ_CP022347.1 Campylobacter avium LMG 24591
107 2879794 2880066 + NZ_AP018437.1 Pelolinea submarina
108 2501326 2501595 - NZ_CP065425.1 Heyndrickxia vini
109 774448 774717 - NC_015387.1 Marinithermus hydrothermalis DSM 14884
110 1620979 1621248 + NZ_CP041666.1 Radiobacillus deserti
111 983233 983502 - NC_022549.1 Acholeplasma brassicae
112 2157892 2158161 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
113 1758854 1759123 + NZ_CP029797.1 Paraliobacillus zengyii
114 932217 932486 + NZ_CP013911.1 Staphylococcus haemolyticus
115 1637135 1637404 - NZ_CP066802.1 Actinomyces weissii
116 1585707 1585976 - NZ_CP064056.1 Staphylococcus lloydii
117 1194781 1195050 + NZ_CP071883.1 Curtobacterium flaccumfaciens pv. flaccumfaciens
118 1154686 1154955 - NZ_AP022847.1 Nitrosophilus alvini
119 1873710 1873979 + NZ_LT603683.1 Bacillus glycinifermentans
120 1431205 1431474 - NZ_CP009215.1 Corynebacterium ureicelerivorans
121 2198466 2198735 + NZ_CP036404.1 Komagataeibacter saccharivorans
122 151957 152226 + NZ_CP050139.1 Komagataeibacter rhaeticus
123 1307770 1308039 - NZ_LR134357.1 Actinomyces israelii
124 996100 996369 - NZ_CP017147.1 Bosea vaviloviae
125 3916043 3916312 + NC_016641.1 Paenibacillus terrae HPL-003
126 1851933 1852202 + NC_006270.3 Bacillus licheniformis DSM 13 = ATCC 14580
127 1874583 1874852 + NZ_CP023665.1 Bacillus paralicheniformis
128 1419549 1419818 - NZ_CP065712.1 Staphylococcus auricularis
129 1319676 1319945 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
130 2400464 2400727 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
131 1510518 1510739 + NC_011146.1 Citrifermentans bemidjiense Bem
132 1706731 1707000 + NZ_CP034943.1 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499
133 1738941 1739210 + NC_000964.3 Bacillus subtilis subsp. subtilis str. 168
134 650410 650685 - NC_010263.3 Rickettsia rickettsii str. Iowa
135 644981 645256 - NC_003103.1 Rickettsia conorii str. Malish 7
136 652159 652434 - NC_016639.1 Rickettsia slovaca 13-B
137 653133 653408 - NZ_AP019864.1 Rickettsia heilongjiangensis
138 1927582 1927851 - NZ_CP035504.1 Kocuria indica
139 1666586 1666864 + NC_006177.1 Symbiobacterium thermophilum IAM 14863
140 6148711 6148980 - NZ_CP012109.1 Myxococcus hansupus
141 1394102 1394371 - NZ_CP033897.1 Corynebacterium gerontici
142 735591 735860 + NZ_LR134479.1 Rothia aeria
143 904631 904900 + NZ_LT906464.1 Staphylococcus muscae
144 1821376 1821645 - NZ_CP025227.1 Actinomyces wuliandei
145 3267808 3268074 - NZ_AP023213.1 Citrifermentans bremense
146 689834 690103 + NZ_CP070228.1 Arcanobacterium phocisimile
147 2087763 2088032 + NZ_CP060718.1 Sphingomonas lutea
148 1404983 1405252 - NZ_CP026948.1 Corynebacterium liangguodongii
149 3248520 3248789 + NZ_AP018907.1 Blastochloris tepida
150 684662 684931 + NZ_CP064060.1 Anoxybacillus caldiproteolyticus
151 2483428 2483697 + NZ_CP022203.1 Corallococcus macrosporus DSM 14697
152 1163064 1163333 + NC_011661.1 Dictyoglomus turgidum DSM 6724
153 1497001 1497270 + NZ_CP015438.1 Anoxybacillus amylolyticus
154 2531029 2531298 - NC_002570.2 Alkalihalobacillus halodurans C-125
155 251789 252058 - NZ_CP034588.1 Silicimonas algicola
156 1422108 1422377 + NZ_CP012024.1 Bacillus smithii
157 55707 55976 + NZ_CP034438.1 Flaviflexus salsibiostraticola
158 2215389 2215655 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
159 5715028 5715297 + NZ_CP015136.1 Luteitalea pratensis
160 1094080 1094349 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
161 348749 349018 - NZ_LR134476.1 Trueperella bialowiezensis
162 1200830 1201096 + NZ_CP034791.1 Caldicellulosiruptor changbaiensis
163 1086201 1086476 + NZ_LN794217.1 Rickettsia monacensis
164 528772 529041 + NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734
165 2382765 2383034 - NZ_AP019308.1 Paenibacillus baekrokdamisoli
166 798761 799036 + NC_017058.1 Rickettsia australis str. Cutlack
167 1565529 1565798 - NZ_LR134089.1 Staphylococcus saprophyticus
168 359109 359378 - NZ_CP017705.1 Brevibacillus laterosporus DSM 25
169 1824215 1824484 + NZ_AP017312.1 Aneurinibacillus soli
170 618853 619128 + NC_017049.1 Rickettsia prowazekii str. Chernikova
171 696987 697259 - NZ_AP023212.1 Hydrogenimonas urashimensis
172 1020874 1021143 + NC_014315.1 Nitrosococcus watsonii C-113
173 1585202 1585471 + NZ_CP017415.1 Acidihalobacter yilgarnenesis
174 583646 583915 + NZ_CP007601.1 Staphylococcus capitis subsp. capitis
175 2273914 2274183 - NC_013791.2 Alkalihalobacillus pseudofirmus OF4
176 4677253 4677522 - NC_008576.1 Magnetococcus marinus MC-1
177 996006 996275 + NC_011297.1 Dictyoglomus thermophilum H-6-12
178 4446399 4446668 + NZ_CP045298.1 Paenibacillus brasilensis
179 3415606 3415875 - NZ_CP020028.1 Paenibacillus kribbensis
180 1749105 1749374 + NZ_CP027770.1 Staphylococcus felis
181 1058595 1058864 + NC_014925.1 Staphylococcus pseudintermedius HKU10-03
182 3700723 3700992 + NZ_CP025430.1 Paracoccus zhejiangensis
183 2267314 2267583 + NZ_CP020773.1 Staphylococcus lutrae
184 730417 730686 + NZ_CP025086.1 Methylovirgula ligni
185 1493985 1494251 + NZ_CP007514.1 Rubrobacter radiotolerans
186 636310 636579 - NZ_CP010401.1 Bartonella ancashensis
187 624127 624402 + NC_017066.1 Rickettsia typhi str. TH1527
188 1393931 1394200 + NC_013943.1 Denitrovibrio acetiphilus DSM 12809
189 676151 676420 + NZ_CP036532.1 Roseitalea porphyridii
190 1158793 1159065 - NC_014960.1 Anaerolinea thermophila UNI-1
191 2630789 2631058 - NZ_CP023564.1 Brachybacterium ginsengisoli
192 930167 930436 - NZ_CP019573.1 Abyssicoccus albus
193 872924 873193 - NZ_CP018199.1 Staphylococcus succinus
194 3207621 3207890 - NZ_CP014616.1 Sporosarcina psychrophila
195 3587321 3587590 - NZ_CP045929.1 Saccharopolyspora coralli
196 2842892 2843161 - NZ_CP022657.1 Tumebacillus algifaecis
197 4303437 4303706 + NZ_CP030926.1 Peribacillus butanolivorans
198 889800 890069 - NZ_CP017704.1 Peribacillus simplex NBRC 15720 = DSM 1321
199 2132540 2132809 - NZ_CP039292.1 Actinomyces procaprae
200 643615 643890 - NC_009881.1 Rickettsia akari str. Hartford
201 190542 190811 + NZ_CP060782.1 Sphingomonas sediminicola
202 2404126 2404395 + NC_008095.1 Myxococcus xanthus DK 1622
203 1429424 1429693 - NC_009486.1 Thermotoga petrophila RKU-1
204 1452405 1452674 - NC_023151.1 Thermotoga maritima MSB8
205 2018026 2018295 + NZ_CP019875.1 Komagataeibacter nataicola
206 2964726 2964995 + NC_020126.1 Myxococcus stipitatus DSM 14675
207 437747 438016 + NZ_CP045571.1 Acidithiobacillus thiooxidans ATCC 19377
208 4334285 4334554 + NC_017584.1 Rhodospirillum rubrum F11
209 748533 748802 + NZ_CP068061.1 Mammaliicoccus vitulinus
210 1298399 1298668 + NC_017857.3 Methylophaga nitratireducenticrescens
211 230835 231104 + NZ_CP025583.1 Paracoccus jeotgali
212 1315354 1315626 - NC_017735.1 Helicobacter cetorum MIT 99-5656
213 2816887 2817153 - NZ_CP021023.1 Sedimentisphaera salicampi
214 2684222 2684491 + NZ_CP013023.1 Paenibacillus bovis
215 785298 785567 - NZ_CP004372.1 Roseibacterium elongatum DSM 19469
216 6186859 6187146 + NC_021985.1 Streptomyces collinus Tu 365
217 435181 435450 - NZ_CP066049.1 Actinomyces naeslundii
218 1453676 1453945 - NC_013642.1 Thermotoga naphthophila RKU-10
219 513250 513519 - NZ_CP014022.1 Staphylococcus lugdunensis
220 1362410 1362679 + NZ_CP033460.1 Staphylococcus debuckii
221 915245 915514 + NZ_CP045927.1 Staphylococcus agnetis
222 2705564 2705833 - NZ_LR134363.1 Actinomyces slackii
223 601880 602155 + NC_016929.1 Rickettsia canadensis str. CA410
224 1645699 1645968 - NZ_CP008747.1 Staphylococcus hyicus
225 1490259 1490528 - NZ_LT906462.1 Mammaliicoccus stepanovicii
226 100671 100940 - NZ_CP015230.1 Epibacterium mobile F1926
227 2935986 2936255 + NZ_CP022316.1 Brachybacterium avium
228 1768529 1768795 + NZ_CP009788.1 Geobacter pickeringii
229 2208030 2208299 - NZ_LS483464.1 Corynebacterium renale
230 7594690 7594959 - NC_017030.1 Corallococcus coralloides DSM 2259
231 3269573 3269842 + NZ_CP027668.1 Phreatobacter cathodiphilus
232 232492 232761 + NZ_CP022096.2 Staphylococcus pettenkoferi
233 2692220 2692507 - NZ_CP032427.1 Streptomyces griseorubiginosus
234 1412134 1412403 - NZ_CP022046.2 Mammaliicoccus sciuri
235 7803928 7804215 + NZ_CP045096.1 Streptomyces phaeolivaceus
236 2868387 2868674 - NZ_CP023689.1 Streptomyces chartreusis
237 2651498 2651767 + NZ_AP023172.1 Rhodococcus qingshengii
238 2375262 2375549 - NZ_CP026652.1 Streptomyces dengpaensis
239 7393860 7394147 + NZ_CP034539.1 Streptomyces cyaneochromogenes
240 6641751 6642020 - NC_009142.1 Saccharopolyspora erythraea NRRL 2338
241 3089414 3089701 - NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
242 569330 569602 - NC_015499.1 Thermodesulfobium narugense DSM 14796
243 1238735 1239004 + NC_014831.1 Thermaerobacter marianensis DSM 12885
244 1209896 1210165 - NZ_CP058235.1 Bartonella alsatica
245 1193714 1193983 + NZ_CP011366.1 Salinicoccus halodurans
246 496925 497194 - NZ_LR134529.1 Bartonella vinsonii
247 2153091 2153360 + NZ_CP062938.1 Bifidobacterium eulemuris
248 643871 644140 - NZ_CP062948.1 Bifidobacterium lemurum
249 3525461 3525730 + NZ_CP021434.1 Tumebacillus avium
250 3017105 3017374 + NZ_CP039690.1 Phreatobacter stygius
251 2871900 2872187 - NC_013929.1 Streptomyces scabiei 87.22
252 6136994 6137284 + NZ_CP010407.1 Streptomyces vietnamensis
253 81774 82043 - NC_014664.1 Rhodomicrobium vannielii ATCC 17100
254 5607144 5607434 + NZ_CP023693.1 Streptomyces cinereoruber
255 336604 336873 + NZ_CP029353.1 Azospirillum thermophilum
256 3158099 3158368 + NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493
257 1449352 1449615 - NZ_CP026538.1 Desulfovibrio carbinolicus
258 2040835 2041104 - NZ_CP026999.1 Bifidobacterium longum
259 5679048 5679338 + NZ_CP029196.1 Streptomyces venezuelae
260 401782 402051 + NZ_CP006712.1 Bifidobacterium breve JCM 7017
261 2231785 2232054 - NZ_CP016268.1 Woeseia oceani
262 703134 703370 - NZ_CP009498.1 Endomicrobium proavitum
263 1371943 1372209 - NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
264 1301958 1302227 + NC_008783.1 Bartonella bacilliformis KC583
265 1515811 1516080 + NZ_CP060780.1 Sphingomonas daechungensis
266 3458671 3458940 - NZ_CP012946.1 Blastochloris viridis
267 525573 525845 - NZ_CP020921.1 Thermodesulfobium acidiphilum
268 5890034 5890321 + NZ_CP023695.1 Streptomyces alboniger
269 3661348 3661617 + NZ_CP054599.1 Sulfitobacter pseudonitzschiae
270 1927665 1927931 - NZ_CP034413.2 Dysosmobacter welbionis
271 904352 904624 + NC_012039.1 Campylobacter lari RM2100
272 2555023 2555313 - NZ_CP011340.1 Streptomyces pristinaespiralis
273 1695353 1695625 - NZ_CP036246.2 [Arcobacter] porcinus
274 1564454 1564711 - NZ_AP019822.1 Pseudoleptotrichia goodfellowii
275 1527684 1527971 + NZ_CP030862.1 Streptomyces globosus
276 1918311 1918577 + NZ_CP010802.1 Desulfuromonas soudanensis
277 4922285 4922575 + NZ_CP054938.1 Streptomyces harbinensis
278 1606789 1607058 + NC_022997.1 Hyphomicrobium nitrativorans NL23
279 4805329 4805619 + NZ_CP009922.3 Streptomyces xiamenensis
280 1845701 1845988 - NZ_CP023202.1 Streptomyces xinghaiensis S187
281 1581958 1582227 - NZ_CP040586.1 Furfurilactobacillus rossiae
282 1792001 1792267 + NC_007517.1 Geobacter metallireducens GS-15
283 5791526 5791813 + NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
284 1301125 1301394 + NZ_CP012154.1 Wenzhouxiangella marina
285 2653478 2653765 - NZ_CP051006.1 Streptomyces griseofuscus
286 6772258 6772545 + NZ_CP047020.1 Streptomyces broussonetiae
287 5768123 5768410 + NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
288 2380331 2380618 - NZ_LN831790.1 Streptomyces leeuwenhoekii
289 3118203 3118490 - NZ_CP017248.1 Streptomyces fodineus
290 6369916 6370203 + NZ_CP023407.1 Streptomyces fungicidicus
291 6011037 6011324 + NZ_CP063374.1 Streptomyces chromofuscus
292 2083233 2083520 - NZ_CP022310.1 Streptomyces calvus
293 615469 615741 + NZ_CP012547.1 Campylobacter pinnipediorum subsp. pinnipediorum
294 602697 602966 - NZ_LT605585.1 Brucella inopinata
295 5513326 5513613 + NZ_CP021080.1 Streptomyces pluripotens
296 206306 206575 + NC_017079.1 Caldilinea aerophila DSM 14535 = NBRC 104270
297 6064123 6064413 + NZ_CP020700.1 Streptomyces tsukubensis
298 1358111 1358398 - NC_020990.1 Streptomyces albidoflavus
299 28990 29259 + NZ_CP024899.1 Rhodobaca barguzinensis
300 2618738 2619025 - NZ_AP023440.1 Streptomyces glomeroaurantiacus
301 1300680 1300946 + NZ_HF545616.1 Ruminococcus bicirculans
302 4274599 4274868 - NZ_CP043538.1 Methylobacterium mesophilicum SR1.6/6
303 2491117 2491386 + NZ_CP015093.1 Salipiger abyssi
304 5831544 5831834 + NZ_CP042266.1 Streptomyces qinzhouensis
305 5422036 5422323 + NZ_CP040752.1 Streptomyces rectiverticillatus
306 2019853 2020122 - NC_003317.1 Brucella melitensis bv. 1 str. 16M
307 2089197 2089466 + NC_010103.1 Brucella canis ATCC 23365
308 2091024 2091293 + NC_004310.3 Brucella suis 1330
309 2094601 2094870 + NC_009505.1 Brucella ovis ATCC 25840
310 2100175 2100444 + NC_013119.1 Brucella microti CCM 4915
311 2021067 2021336 - NC_022905.1 Brucella ceti TE10759-12
312 2104600 2104869 + NC_007618.1 Brucella abortus 2308
313 578208 578468 + NC_018024.1 Acetomicrobium mobile DSM 13181
314 898450 898716 + NZ_LR134524.1 Peptoniphilus harei
315 822654 822923 + NZ_CP066060.1 Actinomyces oris
316 2837631 2837918 - NZ_CP045643.1 Streptomyces fagopyri
317 2844392 2844679 - NZ_CP030073.1 Streptomyces cadmiisoli
318 6534736 6535023 + NZ_CP071139.1 Streptomyces nojiriensis
319 1167407 1167676 - NC_017059.1 Pararhodospirillum photometricum DSM 122
320 5340881 5341168 + NZ_CP015866.1 Streptomyces parvulus
321 45049 45312 - NC_016803.1 Pseudodesulfovibrio mercurii
322 1018457 1018729 + NC_005090.1 Wolinella succinogenes DSM 1740
323 4614252 4614521 - NC_015259.1 Polymorphum gilvum SL003B-26A1
324 675656 675919 + NZ_AP019846.1 Leptotrichia hongkongensis
325 3305327 3305596 + NZ_CP030126.1 Indioceanicola profundi
326 388154 388423 + NZ_AP012322.1 Bifidobacterium angulatum DSM 20098 = JCM 7096
327 728281 728544 + NZ_AP019827.1 Leptotrichia shahii
328 3369633 3369899 - NC_010001.1 Lachnoclostridium phytofermentans ISDg
329 3938249 3938518 - NZ_CP053086.1 Pelagibacterium halotolerans
330 2127141 2127428 + NZ_CP016279.1 Streptomyces griseochromogenes
331 2193316 2193603 - NZ_CP023701.1 Streptomyces subrutilus
332 1575490 1575756 + NZ_AP019004.1 Phascolarctobacterium faecium
333 6782563 6782850 + NZ_CP023694.1 Streptomyces coeruleorubidus
334 3421515 3421784 + NZ_CP042304.1 Devosia ginsengisoli
335 5836883 5837170 + NZ_CP023703.1 Streptomyces galilaeus
336 4633445 4633732 + NZ_CP032229.1 Streptomyces seoulensis
337 2064121 2064408 - NZ_CP023692.1 Streptomyces vinaceus
338 6406270 6406557 + NZ_CP021978.1 Streptomyces hawaiiensis
339 2082467 2082754 - NZ_CP060404.1 Streptomyces buecherae
340 2180178 2180450 - NZ_CP018799.1 Mariprofundus aestuarium
341 1501154 1501444 - NZ_CP065253.1 Streptomyces clavuligerus
342 610205 610471 + NZ_CP016379.1 Anoxybacter fermentans
343 2583324 2583611 - NZ_CP034687.1 Streptomyces griseoviridis
344 2785169 2785456 - NZ_CP022744.1 Streptomyces lincolnensis
345 706870 707127 + NZ_AP019829.2 Leptotrichia wadei
346 6183030 6183317 + NZ_CP019457.1 Streptomyces lydicus
347 5505529 5505816 + NZ_CP029254.1 Streptomyces spongiicola
348 2473067 2473333 + NZ_CP019791.1 Anaerohalosphaera lusitana
349 6285231 6285518 + NZ_CP071839.1 Streptomyces cyanogenus
350 757405 757668 + NC_013192.1 Leptotrichia buccalis C-1013-b
351 3833448 3833717 + NZ_CP047045.1 Terricaulis silvestris
352 2596283 2596570 - NZ_CP023688.1 Streptomyces rimosus
353 986632 986901 - NC_010505.1 Methylobacterium radiotolerans JCM 2831
354 480868 481137 - NZ_CP015367.1 Methylobacterium phyllosphaerae
355 1149531 1149800 - NZ_CP003811.1 Methylobacterium oryzae CBMB20
356 5586519 5586806 + NZ_AP023439.1 Streptomyces tuirus
357 5561148 5561435 + NZ_CP029043.1 Streptomyces nigra
358 81867 82136 - NC_009937.1 Azorhizobium caulinodans ORS 571
359 4920175 4920465 + NZ_CP017316.1 Streptomyces rubrolavendulae
360 5110580 5110870 + NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
361 4134078 4134347 - NC_014217.1 Starkeya novella DSM 506
362 6784258 6784545 + NZ_CP022685.1 Streptomyces formicae
363 2916879 2917166 - NZ_CP023699.1 Streptomyces kanamyceticus
364 7519895 7520182 + NZ_CP034463.1 Streptomyces aquilus
365 1095074 1095340 - NC_016026.1 Micavibrio aeruginosavorus ARL-13
366 2062813 2063079 + NZ_LT906446.1 Megamonas hypermegale
367 6380554 6380841 + NZ_CP023691.1 Streptomyces platensis
368 1775095 1775358 - NZ_AP019845.1 Leptotrichia trevisanii
369 162303 162572 - NC_020300.1 Bartonella australis Aust/NH1
370 1437761 1438027 + NC_008148.1 Rubrobacter xylanophilus DSM 9941
371 1204480 1204746 + NC_014387.1 Butyrivibrio proteoclasticus B316
372 5173725 5174012 + NZ_CP029188.1 Streptomyces tirandamycinicus
373 3001971 3002237 - NC_014833.1 Ruminococcus albus 7 = DSM 20455
374 5962331 5962621 + NZ_CP031194.1 Streptomyces paludis
375 3553554 3553823 + NZ_CP023067.1 Ensifer sojae CCBAU 05684
376 6573146 6573433 + NZ_CP015098.1 Streptomyces qaidamensis
377 3887967 3888236 + NC_009719.1 Parvibaculum lavamentivorans DS-1
378 4064622 4064891 + NZ_CP029451.1 Sinorhizobium fredii CCBAU 25509
379 239765 240034 + NZ_CP013107.1 Sinorhizobium americanum
380 1812936 1813226 - NZ_CP034279.1 Streptomyces ficellus
381 1080759 1081028 - NZ_CP026100.1 Caulobacter flavus
382 1625461 1625730 - NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800
383 5626919 5627188 + NZ_CP030265.1 Skermanella pratensis
384 1736870 1737157 - NZ_CP031742.1 Streptomyces koyangensis
385 897607 897876 + NZ_CP008944.1 Corynebacterium atypicum
386 5891402 5891689 + NZ_CP072931.1 Streptomyces auratus AGR0001
387 2029971 2030240 + NZ_CP048630.1 Ancylobacter pratisalsi
388 4209211 4209480 + NZ_CP054027.1 Rhizobium hidalgonense
389 4310268 4310537 - NZ_CP034998.1 Rhizobium acidisoli
390 41475 41744 + NZ_CP027850.1 Caulobacter segnis
391 1492648 1492914 - NC_014654.1 Halanaerobium hydrogeniformans
392 2566908 2567177 + NZ_CP022604.1 [Ochrobactrum] quorumnocens
393 1820110 1820373 - NC_014614.1 Acetoanaerobium sticklandii
394 2703276 2703545 + NZ_CP064063.1 Brucella anthropi
395 1450532 1450789 - NC_014632.1 Ilyobacter polytropus DSM 2926
396 3372314 3372583 + NC_014972.1 Desulfobulbus propionicus DSM 2032
397 3186741 3187010 - NZ_CP023563.1 Brachybacterium vulturis
398 2039544 2039810 - NC_018020.1 Turneriella parva DSM 21527
399 715903 716166 + NC_014011.1 Aminobacterium colombiense DSM 12261
400 3097069 3097338 + NZ_CP015108.1 Sporosarcina ureae
401 2213234 2213506 + NZ_LT859958.1 Brevefilum fermentans
402 755567 755830 + NC_016148.1 Thermovirga lienii DSM 17291
403 3843448 3843717 - NC_013510.1 Thermomonospora curvata DSM 43183
404 2287074 2287343 + NC_013595.1 Streptosporangium roseum DSM 43021
405 4153441 4153710 - NC_013757.1 Geodermatophilus obscurus DSM 43160
406 2186144 2186413 + NZ_CP029146.1 Rhodococcus ruber
407 2193686 2193955 + NZ_CP045572.1 Nonomuraea nitratireducens
408 3633393 3633662 + NZ_AP022588.1 Mycolicibacterium sediminis
409 2094204 2094473 + NZ_CP016076.1 Actinoalloteichus fjordicus
410 710501 710770 + NZ_CP033972.1 Gordonia insulae
411 1990691 1990960 + NZ_CP022521.1 Actinoalloteichus hoggarensis
412 5773860 5774129 + NZ_AP022577.1 Mycolicibacterium aubagnense
413 3462899 3463168 + NZ_CP043474.1 Mycobacterium grossiae
414 2349632 2349901 - NZ_CP039291.1 Cellulomonas shaoxiangyii
415 1686394 1686663 + NC_014151.1 Cellulomonas flavigena DSM 20109
416 7847558 7847827 - NC_022657.1 Actinoplanes friuliensis DSM 7358
417 1933688 1933957 + NZ_CP019066.1 Tsukamurella tyrosinosolvens
418 2034694 2034963 + NZ_AP018920.1 Pseudonocardia autotrophica
419 961033 961302 - NZ_LS483468.1 Rhodococcus coprophilus
420 6238264 6238500 - NC_008278.1 Frankia alni ACN14a
421 9365931 9366200 - NZ_CP034550.1 Saccharothrix syringae
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_011831.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF01138.23 0.86 364 257 same-strand 3' exoribonuclease family, domain 1
2 PF03725.17 0.74 311 249.5 same-strand 3' exoribonuclease family, domain 2
3 PF00575.25 0.86 364 269.0 same-strand S1 RNA binding domain
4 PF03726.16 0.86 360 254.5 same-strand Polyribonucleotide nucleotidyltransferase, RNA binding domain
5 PF00013.31 0.85 358 256.0 same-strand KH domain
++ More..