Result : Q0BT31
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | RNA-binding protein Hfq |
| NCBI Accession ID | CP000394.2 |
| Organism | Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) |
| Left | 1250898 |
| Right | 1251179 |
| Strand | + |
| Nucleotide Sequence | ATGGCCAGTGAAAAGTCCCAGAACGTTCAAGATGTCTTTCTCAACCACGTGCGCAAGAGCAAGACACCGGTGACGGTATTTCTGGTCAATGGGGTCAAGCTTCAGGGTATTATTACCTGGTTTGACAATTTCTCTGTTCTCTTACGCCGTGACGGGCATACCCAGCTTGTCTATAAACATGCAATCAGCACCGTGATGCCTGGTGCACCCATTCAATTGTTCGACGCGACCAAGCCGGAAGGCGATTTGGGCCGTGATACGGCTGCCTATTCCGACGAGTAG |
| Sequence | MASEKSQNVQDVFLNHVRKSKTPVTVFLVNGVKLQGIITWFDNFSVLLRRDGHTQLVYKHAISTVMPGAPIQLFDATKPEGDLGRDTAAYSDE |
| Source of smORF | Swiss-Prot |
| Function | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. {ECO:0000255|HAMAP-Rule:MF_00436}. |
| Pubmed ID | 17827295 |
| Domain | CDD:412267 |
| Functional Category | RNA-binding |
| Uniprot ID | Q0BT31 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 351
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1247364 | 1247645 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 2 | 1615181 | 1615501 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 3 | 1080084 | 1080371 | - | NZ_CP029176.1 | Acidibrevibacterium fodinaquatile |
| 4 | 2293224 | 2293532 | + | NZ_CP053708.1 | Lichenicola cladoniae |
| 5 | 1499772 | 1500029 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 6 | 1028013 | 1028243 | - | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 7 | 1187282 | 1187536 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 8 | 1686625 | 1686873 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 9 | 1878990 | 1879259 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 10 | 2524261 | 2524512 | + | NZ_CP042582.1 | Hypericibacter adhaerens |
| 11 | 1449752 | 1449979 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 12 | 2107642 | 2107899 | - | NZ_CP024199.1 | Thalassospira marina |
| 13 | 2120469 | 2120726 | - | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 14 | 1012168 | 1012395 | - | NZ_CP029829.1 | Azospirillum ramasamyi |
| 15 | 1686777 | 1687004 | + | NZ_CP054619.1 | Azospirillum oryzae |
| 16 | 2641590 | 2641817 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 17 | 2897457 | 2897705 | + | NZ_CP030265.1 | Skermanella pratensis |
| 18 | 4282551 | 4282802 | + | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 19 | 1342388 | 1342636 | - | NZ_CP030126.1 | Indioceanicola profundi |
| 20 | 1976387 | 1976638 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 21 | 2987196 | 2987480 | - | NZ_CP062147.1 | Komagataeibacter hansenii |
| 22 | 97436 | 97687 | + | NZ_CP053923.1 | Defluviicoccus vanus |
| 23 | 2756880 | 2757164 | + | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 24 | 2666773 | 2667057 | + | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 25 | 3521987 | 3522244 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 26 | 3095146 | 3095415 | + | NZ_CP041636.1 | Ferrovibrio terrae |
| 27 | 2052001 | 2052249 | + | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 28 | 2596314 | 2596592 | + | NZ_CP019875.1 | Komagataeibacter nataicola |
| 29 | 2667280 | 2667537 | - | NZ_CP031555.1 | Thalassospira indica |
| 30 | 6663786 | 6664037 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 31 | 1853104 | 1853355 | - | NC_014217.1 | Starkeya novella DSM 506 |
| 32 | 655568 | 655852 | + | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 33 | 2766525 | 2766773 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 34 | 2577694 | 2577948 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 35 | 5937954 | 5938202 | - | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 36 | 3279028 | 3279276 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 37 | 6983087 | 6983335 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 38 | 3808510 | 3808758 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 39 | 3159529 | 3159777 | + | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 40 | 3795847 | 3796095 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 41 | 3990084 | 3990332 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 42 | 4174113 | 4174361 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 43 | 4442194 | 4442442 | - | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 44 | 4324694 | 4324942 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 45 | 4307564 | 4307812 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 46 | 6540238 | 6540486 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 47 | 4911006 | 4911254 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 48 | 4726440 | 4726688 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 49 | 5288065 | 5288313 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 50 | 2292260 | 2292505 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 51 | 2078378 | 2078626 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 52 | 2103497 | 2103757 | - | NZ_CP012946.1 | Blastochloris viridis |
| 53 | 6632833 | 6633087 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 54 | 2026845 | 2027090 | - | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 55 | 3275460 | 3275723 | - | NZ_CP044331.1 | Methylocystis parvus |
| 56 | 1579848 | 1580096 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 57 | 2926032 | 2926286 | + | NZ_CP039546.1 | Methylorubrum populi |
| 58 | 4781219 | 4781476 | + | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 59 | 5638264 | 5638518 | - | NZ_CP029553.1 | Methylobacterium terrae |
| 60 | 2225025 | 2225279 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 61 | 3964978 | 3965232 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 62 | 3075499 | 3075744 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 63 | 1144173 | 1144424 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 64 | 1760368 | 1760619 | + | NZ_CP014525.1 | Haematospirillum jordaniae |
| 65 | 1894923 | 1895174 | + | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
| 66 | 2234271 | 2234525 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 67 | 1199894 | 1200145 | + | NZ_CP015367.1 | Methylobacterium phyllosphaerae |
| 68 | 5692003 | 5692254 | + | NZ_CP029550.1 | Methylobacterium durans |
| 69 | 4278149 | 4278397 | + | NZ_CP017147.1 | Bosea vaviloviae |
| 70 | 446713 | 446964 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 71 | 1560490 | 1560741 | + | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
| 72 | 1649919 | 1650167 | - | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 73 | 855 | 1109 | + | NZ_CP016616.1 | Microvirga ossetica |
| 74 | 663873 | 664115 | - | NZ_CP016616.1 | Microvirga ossetica |
| 75 | 2003417 | 2003677 | - | NZ_AP018907.1 | Blastochloris tepida |
| 76 | 595349 | 595600 | + | NC_011666.1 | Methylocella silvestris BL2 |
| 77 | 2431004 | 2431261 | - | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 78 | 1773345 | 1773590 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 79 | 2069031 | 2069285 | + | NZ_CP045423.1 | Microvirga thermotolerans |
| 80 | 1727075 | 1727329 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 81 | 1459366 | 1459614 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 82 | 1686674 | 1686922 | + | NZ_CP041025.1 | Paremcibacter congregatus |
| 83 | 1902279 | 1902527 | - | NZ_CP013002.1 | Caulobacter henricii |
| 84 | 1628620 | 1628856 | - | NZ_CP032125.1 | Profundibacter amoris |
| 85 | 2930000 | 2930254 | - | NZ_CP025086.1 | Methylovirgula ligni |
| 86 | 1722854 | 1723102 | + | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 87 | 2444259 | 2444507 | + | NZ_CP061205.1 | Kordiimonas pumila |
| 88 | 1986158 | 1986454 | - | NZ_CP060244.1 | Entomobacter blattae |
| 89 | 1548381 | 1548641 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 90 | 550024 | 550272 | - | NC_014817.1 | Asticcacaulis excentricus CB 48 |
| 91 | 4451430 | 4451690 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 92 | 2802330 | 2802578 | + | NZ_CP048815.1 | Caulobacter rhizosphaerae |
| 93 | 1579087 | 1579332 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 94 | 619965 | 620198 | + | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 95 | 3208050 | 3208295 | + | NZ_CP022048.2 | Brevundimonas vesicularis |
| 96 | 2162721 | 2162969 | + | NZ_CP027850.1 | Caulobacter segnis |
| 97 | 1945962 | 1946210 | + | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 98 | 373301 | 373534 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 99 | 2050520 | 2050768 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 100 | 2260457 | 2260690 | + | NZ_CP004393.1 | Celeribacter indicus |
| 101 | 4050702 | 4050950 | - | NZ_CP026100.1 | Caulobacter flavus |
| 102 | 1923095 | 1923346 | - | NZ_CP047045.1 | Terricaulis silvestris |
| 103 | 1933064 | 1933309 | - | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 104 | 1005686 | 1005919 | + | NZ_LN832559.1 | Paracoccus aminovorans |
| 105 | 1390430 | 1390663 | + | NZ_CP045073.1 | Paracoccus kondratievae |
| 106 | 1272491 | 1272739 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 107 | 3446944 | 3447183 | + | NZ_CP015093.1 | Salipiger abyssi |
| 108 | 2295193 | 2295426 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 109 | 3335130 | 3335378 | - | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 110 | 1989425 | 1989658 | - | NZ_CP025583.1 | Paracoccus jeotgali |
| 111 | 2725997 | 2726230 | - | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 112 | 1041691 | 1041927 | - | NZ_CP022196.1 | Celeribacter ethanolicus |
| 113 | 1454877 | 1455110 | + | NZ_CP061202.1 | Rhodobacter capsulatus |
| 114 | 3148393 | 3148626 | + | NZ_CP030918.1 | Paracoccus suum |
| 115 | 2205127 | 2205360 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 116 | 1397540 | 1397788 | - | NZ_CP029479.1 | Phenylobacterium parvum |
| 117 | 438597 | 438836 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 118 | 2770073 | 2770306 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 119 | 2615079 | 2615312 | - | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 120 | 435688 | 435921 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 121 | 3117337 | 3117582 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 122 | 4704322 | 4704567 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 123 | 289516 | 289761 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 124 | 6136817 | 6137062 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 125 | 4235733 | 4235978 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 126 | 4138803 | 4139048 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 127 | 4660681 | 4660926 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 128 | 1343337 | 1343570 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 129 | 589573 | 589812 | - | NZ_CP012023.1 | Celeribacter marinus |
| 130 | 1489852 | 1490091 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 131 | 4066760 | 4067005 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 132 | 2076066 | 2076299 | - | NZ_CP012661.1 | Defluviimonas alba |
| 133 | 2052112 | 2052351 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 134 | 3421391 | 3421624 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 135 | 1789498 | 1789731 | - | NZ_CP020612.1 | Paracoccus contaminans |
| 136 | 542161 | 542394 | + | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 137 | 3773049 | 3773282 | + | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 138 | 2374693 | 2374938 | - | NZ_CP024201.1 | Caulobacter mirabilis |
| 139 | 722769 | 723002 | - | NZ_CP061498.1 | Roseicitreum antarcticum |
| 140 | 982248 | 982496 | - | NZ_CP071057.1 | Marinicauda algicola |
| 141 | 807790 | 808029 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 142 | 650537 | 650776 | - | NZ_CP027407.1 | Roseobacter denitrificans |
| 143 | 1848076 | 1848315 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 144 | 3248481 | 3248720 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 145 | 75561 | 75794 | - | NZ_CP024422.1 | Paracoccus yeei |
| 146 | 530818 | 531051 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 147 | 606377 | 606613 | - | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 148 | 1913234 | 1913473 | - | NZ_CP048788.1 | Roseobacter ponti |
| 149 | 1806489 | 1806728 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 150 | 1413845 | 1414084 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 151 | 1541678 | 1541917 | + | NZ_CP010650.1 | Phaeobacter inhibens |
| 152 | 1890985 | 1891224 | - | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 153 | 1327351 | 1327590 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 154 | 2217361 | 2217600 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 155 | 1895793 | 1896032 | - | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 156 | 2558072 | 2558305 | - | NZ_CP034588.1 | Silicimonas algicola |
| 157 | 1506772 | 1507011 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 158 | 952376 | 952609 | - | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 159 | 2606979 | 2607212 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 160 | 1060744 | 1060983 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 161 | 1336656 | 1336889 | + | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 162 | 1632675 | 1632908 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 163 | 1701080 | 1701313 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 164 | 762117 | 762356 | + | NZ_LR134527.1 | Bartonella elizabethae |
| 165 | 1616177 | 1616416 | - | NZ_CP031843.2 | Bartonella kosoyi |
| 166 | 1125130 | 1125369 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 167 | 1297220 | 1297459 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 168 | 2520193 | 2520432 | - | NC_020911.1 | Octadecabacter antarcticus 307 |
| 169 | 2022787 | 2023026 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 170 | 1405058 | 1405297 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 171 | 1787297 | 1787536 | - | NZ_CP034348.1 | Roseovarius faecimaris |
| 172 | 2573303 | 2573545 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 173 | 1806120 | 1806353 | + | NZ_CP065915.1 | Pelagovum pacificum |
| 174 | 889187 | 889426 | - | NZ_AP019773.1 | Bartonella quintana |
| 175 | 2683228 | 2683458 | - | NZ_CP032509.1 | Georhizobium profundi |
| 176 | 2028128 | 2028370 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 177 | 1127585 | 1127818 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 178 | 1653064 | 1653303 | + | NZ_CP058235.1 | Bartonella alsatica |
| 179 | 2947059 | 2947328 | - | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 180 | 856757 | 856996 | + | NZ_HG965802.1 | Bartonella henselae |
| 181 | 1758584 | 1758823 | + | NZ_CP017940.1 | Phyllobacterium zundukense |
| 182 | 2143355 | 2143651 | + | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 183 | 1829403 | 1829654 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 184 | 1157574 | 1157813 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 185 | 1834800 | 1835108 | + | NZ_CP009122.1 | Sphingopyxis fribergensis |
| 186 | 1389733 | 1389966 | + | NZ_CP012160.1 | Octadecabacter temperatus |
| 187 | 1676266 | 1676496 | - | NZ_CP042306.1 | Sphingomonas panacisoli |
| 188 | 1672603 | 1672902 | + | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 189 | 734219 | 734458 | + | NC_020300.1 | Bartonella australis Aust/NH1 |
| 190 | 2726985 | 2727233 | + | NZ_CP072611.1 | Aureimonas populi |
| 191 | 697121 | 697399 | + | NZ_CP009571.1 | Sphingomonas taxi |
| 192 | 1001007 | 1001282 | - | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 193 | 1518323 | 1518571 | - | NZ_CP019044.1 | Salaquimonas pukyongi |
| 194 | 644989 | 645228 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 195 | 922490 | 922729 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 196 | 1788321 | 1788581 | - | NZ_CP042808.1 | Acetobacter oryzoeni |
| 197 | 686514 | 686774 | - | NC_021991.1 | Acetobacter pasteurianus 386B |
| 198 | 1441023 | 1441283 | - | NZ_CP015164.1 | Acetobacter ascendens |
| 199 | 1986809 | 1987036 | + | NZ_CP061038.1 | Sphingomonas alpina |
| 200 | 2011299 | 2011559 | - | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 201 | 1126499 | 1126735 | - | NZ_CP010401.1 | Bartonella ancashensis |
| 202 | 389325 | 389582 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 203 | 747092 | 747331 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 204 | 2591398 | 2591655 | - | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 205 | 3313957 | 3314217 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 206 | 1885432 | 1885683 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 207 | 2198881 | 2199132 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 208 | 314696 | 314953 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 209 | 1113758 | 1114006 | + | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 210 | 2544713 | 2544949 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 211 | 1466184 | 1466426 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 212 | 922273 | 922512 | - | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 213 | 1693539 | 1693778 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 214 | 1512107 | 1512352 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 215 | 4017786 | 4018025 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 216 | 3159876 | 3160124 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 217 | 90411 | 90671 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 218 | 2965307 | 2965570 | - | NZ_CP030788.1 | Vibrio campbellii |
| 219 | 284933 | 285196 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 220 | 2966101 | 2966364 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 221 | 82155 | 82418 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 222 | 2114467 | 2114730 | + | NZ_CP019959.1 | Vibrio owensii |
| 223 | 2535747 | 2536010 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 224 | 1337710 | 1337940 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 225 | 2259499 | 2259741 | + | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 226 | 1217966 | 1218226 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 227 | 1328220 | 1328480 | + | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 228 | 2737829 | 2738083 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 229 | 3152113 | 3152355 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 230 | 5900775 | 5901014 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 231 | 4492814 | 4493053 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 232 | 2651091 | 2651345 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 233 | 2641822 | 2642061 | + | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 234 | 2906429 | 2906671 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 235 | 2926599 | 2926826 | - | NZ_CP038254.1 | Legionella israelensis |
| 236 | 44044 | 44304 | - | NZ_CP059571.1 | Neisseria bacilliformis |
| 237 | 3666923 | 3667174 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 238 | 2946538 | 2946783 | - | NZ_CP021455.1 | Comamonas serinivorans |
| 239 | 5989689 | 5989919 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 240 | 418847 | 419113 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 241 | 2874449 | 2874688 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 242 | 4141164 | 4141391 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 243 | 614561 | 614788 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 244 | 3515173 | 3515400 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 245 | 668524 | 668751 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 246 | 3701676 | 3701921 | + | NZ_CP070273.1 | Marinomonas foliarum |
| 247 | 4091591 | 4091830 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 248 | 3558110 | 3558364 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 249 | 2375979 | 2376227 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 250 | 2583778 | 2584020 | - | NZ_LS483250.1 | Moritella yayanosii |
| 251 | 109635 | 109886 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 252 | 3839791 | 3840045 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 253 | 5610529 | 5610756 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 254 | 2039340 | 2039591 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 255 | 111617 | 111853 | - | NZ_CP034464.1 | Undibacterium parvum |
| 256 | 5496953 | 5497207 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 257 | 5474967 | 5475221 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 258 | 5619464 | 5619718 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 259 | 741552 | 741797 | - | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 260 | 3493251 | 3493493 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 261 | 1413926 | 1414177 | + | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 262 | 2953704 | 2953961 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 263 | 976047 | 976295 | + | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 264 | 4012658 | 4012912 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 265 | 4290317 | 4290544 | - | NZ_CP009365.1 | Pseudomonas soli |
| 266 | 1957027 | 1957254 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 267 | 713089 | 713343 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 268 | 1547036 | 1547281 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 269 | 2283853 | 2284101 | - | NZ_CP059565.1 | Neisseria wadsworthii |
| 270 | 1408477 | 1408713 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 271 | 1683073 | 1683321 | + | NZ_CP029210.1 | Aquabacterium olei |
| 272 | 2133290 | 2133535 | - | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 273 | 1645551 | 1645796 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 274 | 5708570 | 5708812 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 275 | 1089911 | 1090147 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 276 | 1315286 | 1315522 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 277 | 1700771 | 1701019 | + | NZ_LR134313.1 | Neisseria canis |
| 278 | 1218657 | 1218917 | + | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 279 | 689141 | 689368 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 280 | 635882 | 636109 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 281 | 4022739 | 4022966 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 282 | 643131 | 643358 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 283 | 621565 | 621792 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 284 | 654675 | 654902 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 285 | 3317383 | 3317610 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 286 | 5332281 | 5332508 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 287 | 3067245 | 3067472 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 288 | 185000 | 185227 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 289 | 529838 | 530077 | - | NZ_CP047165.1 | Pelistega ratti |
| 290 | 2585159 | 2585404 | - | NZ_CP061081.1 | Marinomonas arctica |
| 291 | 559174 | 559425 | + | NC_022664.1 | Spiribacter curvatus |
| 292 | 1711727 | 1711972 | + | NZ_CP061941.1 | Marinomonas algicola |
| 293 | 3132436 | 3132687 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 294 | 892181 | 892432 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 295 | 5247772 | 5247999 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 296 | 582980 | 583207 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 297 | 5601779 | 5602006 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 298 | 5452082 | 5452348 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 299 | 5277427 | 5277687 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 300 | 718381 | 718626 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 301 | 4516279 | 4516539 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 302 | 712391 | 712651 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 303 | 3265600 | 3265845 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 304 | 2870996 | 2871235 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 305 | 5519294 | 5519545 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 306 | 5179487 | 5179735 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 307 | 3864781 | 3865017 | + | NZ_CP024608.1 | Massilia violaceinigra |
| 308 | 2525419 | 2525667 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 309 | 5215906 | 5216133 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 310 | 662940 | 663167 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 311 | 3118124 | 3118351 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 312 | 8605 | 8832 | + | NZ_LN681225.1 | Legionella hackeliae |
| 313 | 612152 | 612412 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 314 | 609978 | 610205 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 315 | 2232102 | 2232350 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 316 | 4217654 | 4217902 | - | NZ_CP059082.1 | Halomonas titanicae |
| 317 | 835686 | 835925 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 318 | 621395 | 621622 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 319 | 227442 | 227678 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 320 | 1822527 | 1822766 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 321 | 4389095 | 4389322 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 322 | 468472 | 468705 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 323 | 1442112 | 1442372 | - | NZ_CP040882.1 | Sutterella faecalis |
| 324 | 10312 | 10557 | + | NZ_LN614830.1 | Tatlockia micdadei |
| 325 | 2232834 | 2233073 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 326 | 3762969 | 3763205 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 327 | 4817689 | 4817925 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 328 | 2501119 | 2501355 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 329 | 4850194 | 4850430 | - | NZ_CP028324.1 | Massilia armeniaca |
| 330 | 609570 | 609797 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 331 | 1902562 | 1902798 | - | NZ_CP046904.1 | Massilia flava |
| 332 | 1142986 | 1143231 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 333 | 1208179 | 1208412 | + | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 334 | 4039071 | 4039298 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 335 | 15384 | 15641 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 336 | 282586 | 282816 | - | NZ_CP072793.1 | Thiothrix unzii |
| 337 | 1933037 | 1933276 | - | NZ_CP054626.1 | Cupriavidus gilardii |
| 338 | 3270227 | 3270466 | - | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 339 | 3494479 | 3494718 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 340 | 3181718 | 3181972 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 341 | 1355631 | 1355885 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 342 | 1143531 | 1143767 | + | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 343 | 820591 | 820818 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 344 | 579701 | 579928 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 345 | 2915269 | 2915502 | - | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 346 | 1211960 | 1212211 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 347 | 3535183 | 3535413 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 348 | 496699 | 496926 | - | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 349 | 523165 | 523413 | + | NZ_CP036422.1 | Halioglobus maricola |
| 350 | 1259447 | 1259692 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 351 | 827699 | 827956 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 352 | 1420784 | 1421056 | - | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP003182.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF16360.7 | 0.96 | 338 | 13.0 | same-strand | GTP-binding GTPase Middle Region |
| 2 | PF13167.8 | 0.96 | 336 | 13.0 | same-strand | GTP-binding GTPase N-terminal |
| 3 | PF01926.25 | 0.97 | 340 | 25 | same-strand | 50S ribosome-binding GTPase |
++ More..