Result : Q0AXK9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | CP000448.1 |
| Organism | Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) |
| Left | 1428999 |
| Right | 1429214 |
| Strand | - |
| Nucleotide Sequence | GTGATTCCGTCTTCCACCAGAGAATTACTCAACATAGCTGATAGTAAATATGCAGTGGTAGTTGCGGTTGCCAAAAGGGCCAGAACCCTTTCCGAGAAGTATAAAGAGGATGAAAACTACCGGCTTTCAACCATGGTAACCCGAGCTTTGGATGAGGTCGTGAATGGTAAAGTAATAATTGAGCCATCAAAAGAAGATGGTTCTCGGGAGGTGTAA |
| Sequence | MIPSSTRELLNIADSKYAVVVAVAKRARTLSEKYKEDENYRLSTMVTRALDEVVNGKVIIEPSKEDGSREV |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | 21966920 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | Q0AXK9 |
| ORF Length (Amino Acid) | 71 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1428999 | 1429214 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 2 | 888185 | 888382 | + | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 3 | 1796116 | 1796289 | + | NZ_CP045875.1 | Heliorestis convoluta |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045875.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00551.21 | 1.0 | 3 | 5513 | same-strand | Formyl transferase |
| 2 | PF02911.20 | 1.0 | 3 | 5513 | same-strand | Formyl transferase, C-terminal domain |
| 3 | PF01327.23 | 1.0 | 3 | 5042 | same-strand | Polypeptide deformylase |
| 4 | PF17764.3 | 1.0 | 3 | 2688 | same-strand | 3'DNA-binding domain (3'BD) |
| 5 | PF18074.3 | 1.0 | 3 | 2688 | same-strand | Primosomal protein N C-terminal domain |
| 6 | PF00270.31 | 1.0 | 3 | 2688 | same-strand | DEAD/DEAH box helicase |
| 7 | PF04851.17 | 1.0 | 3 | 2688 | same-strand | Type III restriction enzyme, res subunit |
| 8 | PF18319.3 | 1.0 | 3 | 2688 | same-strand | PriA DNA helicase Cys-rich region (CRR) domain |
| 9 | PF02773.18 | 1.0 | 3 | 1325 | same-strand | S-adenosylmethionine synthetase, C-terminal domain |
| 10 | PF02772.18 | 1.0 | 3 | 1325 | same-strand | S-adenosylmethionine synthetase, central domain |
| 11 | PF00438.22 | 1.0 | 3 | 1325 | same-strand | S-adenosylmethionine synthetase, N-terminal domain |
| 12 | PF04127.17 | 1.0 | 3 | 3 | same-strand | DNA / pantothenate metabolism flavoprotein |
| 13 | PF02441.21 | 1.0 | 3 | 3 | same-strand | Flavoprotein |
| 14 | PF00625.23 | 1.0 | 3 | 7 | same-strand | Guanylate kinase |
| 15 | PF04025.14 | 1.0 | 3 | 618 | same-strand | Domain of unknown function (DUF370) |
| 16 | PF03755.15 | 1.0 | 3 | 915 | same-strand | YicC-like family, N-terminal region |
| 17 | PF08340.13 | 1.0 | 3 | 915 | same-strand | Domain of unknown function (DUF1732) |
| 18 | PF00122.22 | 0.67 | 2 | 2448.0 | same-strand | E1-E2 ATPase |
| 19 | PF00689.23 | 0.67 | 2 | 2448.0 | same-strand | Cation transporting ATPase, C-terminus |
| 20 | PF00702.28 | 0.67 | 2 | 2448.0 | same-strand | haloacid dehalogenase-like hydrolase |
| 21 | PF13246.8 | 0.67 | 2 | 2448.0 | same-strand | Cation transport ATPase (P-type) |
| 22 | PF00690.28 | 0.67 | 2 | 2448.0 | same-strand | Cation transporter/ATPase, N-terminus |
| 23 | PF01678.21 | 0.67 | 2 | 2602.5 | same-strand | Diaminopimelate epimerase |
| 24 | PF13238.8 | 0.67 | 2 | 25.0 | same-strand | AAA domain |
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