* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008346.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF06969.18
|
1.0
|
2
|
4900.5
|
opposite-strand
|
HemN C-terminal domain
|
2
|
PF04055.23
|
1.0
|
2
|
4900.5
|
opposite-strand
|
Radical SAM superfamily
|
3
|
PF00009.29
|
1.0
|
2
|
3041.5
|
opposite-strand
|
Elongation factor Tu GTP binding domain
|
4
|
PF06421.14
|
1.0
|
2
|
3041.5
|
opposite-strand
|
GTP-binding protein LepA C-terminus
|
5
|
PF00679.26
|
1.0
|
2
|
3041.5
|
opposite-strand
|
Elongation factor G C-terminus
|
6
|
PF03144.27
|
1.0
|
2
|
3041.5
|
opposite-strand
|
Elongation factor Tu domain 2
|
7
|
PF01926.25
|
1.0
|
2
|
3041.5
|
opposite-strand
|
50S ribosome-binding GTPase
|
8
|
PF10662.11
|
1.0
|
2
|
3041.5
|
opposite-strand
|
Ethanolamine utilisation - propanediol utilisation
|
9
|
PF14492.8
|
1.0
|
2
|
3041.5
|
opposite-strand
|
Elongation Factor G, domain III
|
10
|
PF07454.13
|
1.0
|
2
|
525.0
|
opposite-strand
|
Stage II sporulation protein P (SpoIIP)
|
11
|
PF06144.15
|
1.0
|
2
|
2461.0
|
opposite-strand
|
DNA polymerase III, delta subunit
|
++ More..