Result : Q0AB60
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | RNA-binding protein Hfq |
| NCBI Accession ID | CP000453.1 |
| Organism | Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) |
| Left | 622297 |
| Right | 622566 |
| Strand | + |
| Nucleotide Sequence | ATGGCCAAGGGGCAATCGTTACAGGAACCGTTCCTGAACGCACTGCGCAAGGAAAAGGTGCCGGTATCCATTTATCTGGTCAATGGGATTAAACTGCAGGGGCAGATTGAATCGTTCGACCAGTTCGTGATTCTGCTCCGTAACAACGTCAATCAGATGGTGTACAAGCACGCCATCTCCACCGTCGTTCCGGCTCGCAACGTGCGCACCGCGCCGCCGGTCCCGACGGAGACCCACGCACAGTCCAGCGAGGAATTCGGCAATATCTGA |
| Sequence | MAKGQSLQEPFLNALRKEKVPVSIYLVNGIKLQGQIESFDQFVILLRNNVNQMVYKHAISTVVPARNVRTAPPVPTETHAQSSEEFGNI |
| Source of smORF | Swiss-Prot |
| Function | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. {ECO:0000255|HAMAP-Rule:MF_00436}. |
| Pubmed ID | |
| Domain | CDD:412267 |
| Functional Category | RNA-binding |
| Uniprot ID | Q0AB60 |
| ORF Length (Amino Acid) | 89 |
++ More..
| Conservation Analysis |
No. of Species: 260
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 622297 | 622566 | + | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 2 | 748883 | 749155 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 3 | 1323841 | 1324128 | + | NZ_AP018560.1 | Aerosticca soli |
| 4 | 2411860 | 2412108 | - | NZ_CP016268.1 | Woeseia oceani |
| 5 | 703220 | 703471 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 6 | 1707983 | 1708261 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 7 | 1706939 | 1707217 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 8 | 2288175 | 2288429 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 9 | 2895270 | 2895527 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 10 | 1554831 | 1555091 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 11 | 3015040 | 3015291 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 12 | 1578469 | 1578738 | + | NZ_CP014056.2 | Grimontia hollisae |
| 13 | 5519294 | 5519545 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 14 | 1698711 | 1698983 | + | NZ_CP011131.1 | Lysobacter gummosus |
| 15 | 4279424 | 4279696 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
| 16 | 4149526 | 4149798 | - | NZ_CP023465.1 | Lysobacter capsici |
| 17 | 3842740 | 3843006 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 18 | 2651091 | 2651345 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 19 | 2061283 | 2061534 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 20 | 3460892 | 3461137 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 21 | 2498639 | 2498899 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 22 | 1005584 | 1005841 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 23 | 1712951 | 1713226 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 24 | 2948486 | 2948752 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 25 | 2259481 | 2259741 | + | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 26 | 3712059 | 3712322 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 27 | 3929133 | 3929384 | - | NZ_CP008849.1 | Alteromonas australica |
| 28 | 336486 | 336737 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 29 | 4491004 | 4491273 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 30 | 236026 | 236292 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 31 | 4012658 | 4012912 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 32 | 1169164 | 1169418 | - | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 33 | 4217654 | 4217902 | - | NZ_CP059082.1 | Halomonas titanicae |
| 34 | 77070 | 77345 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 35 | 2500774 | 2501034 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 36 | 2932575 | 2932826 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 37 | 4276105 | 4276356 | - | NZ_CP014322.1 | Alteromonas addita |
| 38 | 4470604 | 4470855 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 39 | 1471044 | 1471292 | + | NZ_CP020931.1 | Marinobacter salarius |
| 40 | 3995349 | 3995582 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 41 | 2611561 | 2611818 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 42 | 1974424 | 1974669 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 43 | 211910 | 212161 | - | NZ_CP021323.1 | Kushneria konosiri |
| 44 | 4030964 | 4031227 | + | NZ_CP044060.1 | Aeromonas veronii |
| 45 | 4287525 | 4287788 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 46 | 4393852 | 4394100 | - | NZ_CP048812.1 | Halomonas socia |
| 47 | 2390110 | 2390385 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 48 | 3457974 | 3458267 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 49 | 1080995 | 1081288 | + | NZ_CP029736.1 | Providencia rettgeri |
| 50 | 3299150 | 3299407 | + | NZ_CP027860.1 | Ahniella affigens |
| 51 | 5708570 | 5708812 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 52 | 1457453 | 1457704 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 53 | 2317568 | 2317816 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 54 | 4290317 | 4290577 | - | NZ_CP009365.1 | Pseudomonas soli |
| 55 | 1658412 | 1658672 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 56 | 3180999 | 3181250 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 57 | 946340 | 946621 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 58 | 619671 | 619931 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 59 | 2581072 | 2581335 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 60 | 892181 | 892432 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 61 | 2425090 | 2425341 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 62 | 475983 | 476237 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 63 | 2890679 | 2890942 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 64 | 3007118 | 3007384 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 65 | 3144998 | 3145243 | - | NZ_CP051183.1 | Bermanella marisrubri |
| 66 | 3839194 | 3839463 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 67 | 2699254 | 2699508 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 68 | 1220658 | 1220939 | - | NZ_CP029556.1 | Lysobacter oculi |
| 69 | 3936187 | 3936453 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 70 | 3219442 | 3219708 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 71 | 5247772 | 5248032 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 72 | 3181718 | 3181972 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 73 | 3494450 | 3494692 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 74 | 1012533 | 1012790 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 75 | 2815674 | 2815919 | - | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 76 | 642172 | 642450 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 77 | 2375979 | 2376227 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 78 | 165455 | 165730 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 79 | 400786 | 401082 | + | NZ_LR134531.1 | Pragia fontium |
| 80 | 3803561 | 3803824 | - | NZ_AP022188.1 | Aeromonas media |
| 81 | 993929 | 994192 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 82 | 768004 | 768270 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 83 | 3227758 | 3228027 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 84 | 5610529 | 5610789 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 85 | 3995029 | 3995328 | - | NZ_LS483422.1 | Providencia heimbachae |
| 86 | 78166 | 78426 | - | NZ_CP017480.1 | Luteibacter rhizovicinus DSM 16549 |
| 87 | 5739956 | 5740234 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 88 | 968437 | 968679 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 89 | 4261218 | 4261517 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 90 | 1431964 | 1432263 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 91 | 2639316 | 2639567 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 92 | 5332281 | 5332541 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 93 | 3701676 | 3701921 | + | NZ_CP070273.1 | Marinomonas foliarum |
| 94 | 5072314 | 5072598 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 95 | 3558110 | 3558364 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 96 | 1547036 | 1547281 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 97 | 2047962 | 2048204 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 98 | 3067245 | 3067505 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 99 | 2320359 | 2320670 | + | NZ_CP011254.1 | Serratia fonticola |
| 100 | 614406 | 614684 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 101 | 2131316 | 2131624 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 102 | 4222797 | 4223066 | - | NZ_CP020472.1 | Shewanella japonica |
| 103 | 553509 | 553787 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 104 | 2585159 | 2585404 | - | NZ_CP061081.1 | Marinomonas arctica |
| 105 | 3599691 | 3599966 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 106 | 1200841 | 1201077 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 107 | 575419 | 575664 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 108 | 2519911 | 2520147 | - | NC_010645.1 | Bordetella avium 197N |
| 109 | 407015 | 407266 | + | NZ_CP017715.1 | Marinobacter salinus |
| 110 | 2825850 | 2826122 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 111 | 2946152 | 2946409 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 112 | 1645551 | 1645796 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 113 | 1480218 | 1480481 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 114 | 2874449 | 2874688 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 115 | 742546 | 742812 | + | NZ_CP037951.1 | Parashewanella tropica |
| 116 | 635536 | 635832 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 117 | 1711727 | 1711972 | + | NZ_CP061941.1 | Marinomonas algicola |
| 118 | 793564 | 793800 | + | NZ_CP043146.1 | Bordetella holmesii |
| 119 | 558909 | 559208 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 120 | 3839791 | 3840045 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 121 | 2945425 | 2945661 | + | NZ_CP021395.1 | Bordetella hinzii |
| 122 | 481559 | 481813 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 123 | 713089 | 713343 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 124 | 2322290 | 2322532 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 125 | 1231635 | 1231877 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 126 | 772789 | 773070 | + | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 127 | 1898232 | 1898468 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 128 | 2998669 | 2998905 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 129 | 1323868 | 1324116 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 130 | 4516279 | 4516539 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 131 | 812194 | 812448 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 132 | 2113170 | 2113406 | + | NC_010170.1 | Bordetella petrii |
| 133 | 4333208 | 4333468 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 134 | 3046715 | 3046975 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 135 | 3658955 | 3659221 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 136 | 712391 | 712651 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 137 | 529838 | 530077 | - | NZ_CP047165.1 | Pelistega ratti |
| 138 | 2360641 | 2360877 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 139 | 383331 | 383615 | + | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 140 | 51172 | 51426 | - | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 141 | 635849 | 636109 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 142 | 4022739 | 4022999 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 143 | 643098 | 643358 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 144 | 621532 | 621792 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 145 | 654642 | 654902 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 146 | 3317383 | 3317643 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 147 | 1011253 | 1011495 | + | NZ_CP038018.1 | Eikenella exigua |
| 148 | 2757536 | 2757802 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 149 | 1642855 | 1643121 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 150 | 2105927 | 2106166 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 151 | 642079 | 642315 | - | NZ_LR134302.1 | Achromobacter spanius |
| 152 | 4356879 | 4357115 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 153 | 431974 | 432210 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 154 | 3207296 | 3207559 | - | NZ_CP060084.1 | Teredinibacter haidensis |
| 155 | 2129087 | 2129323 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 156 | 973293 | 973568 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 157 | 1996589 | 1996825 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 158 | 3118124 | 3118384 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 159 | 1907027 | 1907269 | + | NZ_LR134533.1 | Neisseria weaveri |
| 160 | 5601779 | 5602039 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 161 | 5277427 | 5277687 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 162 | 4141131 | 4141391 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 163 | 614528 | 614788 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 164 | 3515173 | 3515433 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 165 | 668491 | 668751 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 166 | 1407129 | 1407383 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 167 | 1626701 | 1626952 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 168 | 582947 | 583207 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 169 | 523165 | 523413 | + | NZ_CP036422.1 | Halioglobus maricola |
| 170 | 5989689 | 5989952 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 171 | 291222 | 291473 | + | NZ_CP009056.1 | Frischella perrara |
| 172 | 185000 | 185260 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 173 | 612152 | 612412 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 174 | 1822527 | 1822766 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 175 | 2603019 | 2603261 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 176 | 376412 | 376660 | - | NZ_LS483369.1 | Neisseria cinerea |
| 177 | 2169923 | 2170141 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 178 | 33657 | 33899 | + | NZ_LT906482.1 | Eikenella corrodens |
| 179 | 689108 | 689368 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 180 | 3937914 | 3938150 | - | NZ_CP016172.1 | Bordetella flabilis |
| 181 | 1408477 | 1408713 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 182 | 2530183 | 2530434 | + | NZ_CP043575.1 | Comamonas koreensis |
| 183 | 1570357 | 1570608 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 184 | 609537 | 609797 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 185 | 4389095 | 4389355 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 186 | 918486 | 918707 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 187 | 3841590 | 3841832 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 188 | 1846587 | 1846829 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 189 | 662907 | 663167 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 190 | 4039071 | 4039331 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 191 | 621362 | 621622 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 192 | 542047 | 542289 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 193 | 820558 | 820818 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 194 | 609945 | 610205 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 195 | 835686 | 835904 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 196 | 3938637 | 3938867 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 197 | 579668 | 579928 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 198 | 1365059 | 1365280 | + | NZ_LT906434.1 | Neisseria zoodegmatis |
| 199 | 1341047 | 1341298 | + | NZ_CP060414.1 | Neisseria musculi |
| 200 | 5215906 | 5216166 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 201 | 1512107 | 1512328 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 202 | 670246 | 670497 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 203 | 718381 | 718626 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 204 | 5452082 | 5452348 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 205 | 1802237 | 1802458 | - | NZ_CP031700.1 | Neisseria zalophi |
| 206 | 992166 | 992387 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 207 | 496699 | 496926 | - | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 208 | 957452 | 957679 | - | NZ_CP021106.3 | Nitrosospira lacus |
| 209 | 3031880 | 3032119 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 210 | 1322287 | 1322514 | + | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 211 | 2282977 | 2283216 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 212 | 218012 | 218245 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 213 | 3285848 | 3286087 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 214 | 3672495 | 3672734 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 215 | 91787 | 92020 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 216 | 2865310 | 2865543 | - | NZ_CP040709.1 | Inhella inkyongensis |
| 217 | 1701305 | 1701532 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 218 | 1466184 | 1466426 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 219 | 1442112 | 1442372 | - | NZ_CP040882.1 | Sutterella faecalis |
| 220 | 2170562 | 2170789 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 221 | 3152113 | 3152337 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 222 | 459075 | 459320 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 223 | 109635 | 109886 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 224 | 3698862 | 3699104 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 225 | 1446164 | 1446415 | - | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 226 | 1259435 | 1259692 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 227 | 1683073 | 1683321 | + | NZ_CP029210.1 | Aquabacterium olei |
| 228 | 1600302 | 1600565 | - | NZ_CP014671.1 | Immundisolibacter cernigliae |
| 229 | 11939 | 12196 | + | NZ_LT906442.1 | Legionella waltersii |
| 230 | 2258705 | 2258950 | + | NZ_LR134374.1 | Legionella spiritensis |
| 231 | 3312182 | 3312442 | - | NZ_LS483470.1 | Leminorella richardii |
| 232 | 8587 | 8832 | + | NZ_LN681225.1 | Legionella hackeliae |
| 233 | 1197951 | 1198208 | + | NZ_CP054020.1 | Thiomicrorhabdus xiamenensis |
| 234 | 929682 | 929924 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 235 | 2374693 | 2374938 | - | NZ_CP024201.1 | Caulobacter mirabilis |
| 236 | 1933064 | 1933309 | - | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 237 | 97469 | 97687 | + | NZ_CP053923.1 | Defluviicoccus vanus |
| 238 | 2770073 | 2770306 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 239 | 1342388 | 1342636 | - | NZ_CP030126.1 | Indioceanicola profundi |
| 240 | 1391967 | 1392218 | - | NZ_CP054836.1 | Oricola thermophila |
| 241 | 1028013 | 1028243 | - | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 242 | 1727075 | 1727329 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 243 | 1976387 | 1976638 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 244 | 2926032 | 2926286 | + | NZ_CP039546.1 | Methylorubrum populi |
| 245 | 1853104 | 1853355 | - | NC_014217.1 | Starkeya novella DSM 506 |
| 246 | 663873 | 664115 | - | NZ_CP016616.1 | Microvirga ossetica |
| 247 | 1649919 | 1650167 | - | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 248 | 2930000 | 2930230 | - | NZ_CP025086.1 | Methylovirgula ligni |
| 249 | 752244 | 752501 | - | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 250 | 1187282 | 1187503 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 251 | 1499772 | 1500029 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 252 | 290149 | 290403 | - | NZ_CP046908.1 | Stappia indica |
| 253 | 1928123 | 1928380 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 254 | 655601 | 655852 | + | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 255 | 2666806 | 2667057 | + | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 256 | 1686674 | 1686922 | + | NZ_CP041025.1 | Paremcibacter congregatus |
| 257 | 1773345 | 1773590 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 258 | 685432 | 685674 | - | NZ_CP016619.1 | Microvirga ossetica |
| 259 | 2821247 | 2821489 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 260 | 2756913 | 2757164 | + | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 261 | 1518498 | 1518752 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01715.19 | 0.64 | 166 | 95.0 | same-strand | IPP transferase |
| 2 | PF13167.8 | 0.95 | 247 | 30 | same-strand | GTP-binding GTPase N-terminal |
| 3 | PF16360.7 | 0.96 | 249 | 30 | same-strand | GTP-binding GTPase Middle Region |
| 4 | PF01926.25 | 0.96 | 250 | 45.0 | same-strand | 50S ribosome-binding GTPase |
| 5 | PF01145.27 | 0.83 | 217 | 2357 | same-strand | SPFH domain / Band 7 family |
| 6 | PF12221.10 | 0.75 | 196 | 1409.5 | same-strand | Bacterial membrane protein N terminal |
++ More..