* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP015515.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF12730.9
|
1.0
|
3
|
4036.5
|
opposite-strand
|
ABC-2 family transporter protein
|
2
|
PF00005.29
|
1.0
|
3
|
2420
|
opposite-strand
|
ABC transporter
|
3
|
PF00072.26
|
1.0
|
3
|
1533
|
opposite-strand
|
Response regulator receiver domain
|
4
|
PF00196.21
|
1.0
|
3
|
1533
|
opposite-strand
|
Bacterial regulatory proteins, luxR family
|
5
|
PF08281.14
|
1.0
|
3
|
1533
|
opposite-strand
|
Sigma-70, region 4
|
6
|
PF07730.15
|
1.0
|
3
|
400
|
opposite-strand
|
Histidine kinase
|
7
|
PF13575.8
|
1.0
|
3
|
88
|
same-strand
|
Domain of unknown function (DUF4135)
|
8
|
PF05147.15
|
1.0
|
3
|
88
|
same-strand
|
Lanthionine synthetase C-like protein
|
9
|
PF10727.11
|
0.67
|
2
|
3294.0
|
opposite-strand
|
Rossmann-like domain
|
10
|
PF03807.19
|
0.67
|
2
|
3294.0
|
opposite-strand
|
NADP oxidoreductase coenzyme F420-dependent
|
11
|
PF03703.16
|
0.67
|
2
|
4754.0
|
opposite-strand
|
Bacterial PH domain
|
12
|
PF11377.10
|
0.67
|
2
|
6121.0
|
opposite-strand
|
Protein of unknown function (DUF3180)
|
++ More..