Result : Q086A9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Cell division protein FtsB |
| NCBI Accession ID | CP000447.1 |
| Organism | Shewanella frigidimarina (strain NCIMB 400) |
| Left | 1241538 |
| Right | 1241840 |
| Strand | + |
| Nucleotide Sequence | ATGAAGCAACTAATATTTTTACTGATTTGTTTATTGTCACTTTTACAGTACCGGCTTTGGTTGGGCGATAACAATTTGTCAGAATATGTCTTATTGCAAACCCAAATAGCAGGCCAAGAACAAAGTAACGGCAAGCTTGTCGCTCGAAATCAAATTCTTAAAGAAGAGATTATCGATTTAAAACGTGGCACAGAAGCCATTGAAGAGCGTGCCCGTAACGAGTTAGGTATGGTTAAAGAAGGTGAAACTTTTTATCGGGTCGTTGGCAGTGAACTACGTGAACGGAACCCATTTAATCGTTAA |
| Sequence | MKQLIFLLICLLSLLQYRLWLGDNNLSEYVLLQTQIAGQEQSNGKLVARNQILKEEIIDLKRGTEAIEERARNELGMVKEGETFYRVVGSELRERNPFNR |
| Source of smORF | Swiss-Prot |
| Function | Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. {ECO:0000255|HAMAP-Rule:MF_00599}. |
| Pubmed ID | |
| Domain | CDD:416267 |
| Functional Category | Others |
| Uniprot ID | Q086A9 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 94
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1241538 | 1241840 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 2 | 1605805 | 1606107 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 3 | 3413458 | 3413739 | - | NZ_CP041036.1 | Shewanella polaris |
| 4 | 1228225 | 1228527 | - | NZ_CP036200.1 | Shewanella maritima |
| 5 | 3451860 | 3452159 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 6 | 3807126 | 3807425 | - | NC_016901.1 | Shewanella baltica OS678 |
| 7 | 1441381 | 1441677 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 8 | 1378585 | 1378881 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 9 | 3676122 | 3676382 | - | NZ_CP020472.1 | Shewanella japonica |
| 10 | 3596993 | 3597283 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 11 | 4664495 | 4664785 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 12 | 1321151 | 1321453 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 13 | 1534919 | 1535218 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 14 | 3007648 | 3007950 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 15 | 1401737 | 1402039 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 16 | 1909235 | 1909537 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 17 | 1660783 | 1661085 | + | NZ_CP046378.1 | Shewanella algae |
| 18 | 2997172 | 2997456 | - | NZ_CP037951.1 | Parashewanella tropica |
| 19 | 1146084 | 1146380 | + | NZ_LR134531.1 | Pragia fontium |
| 20 | 636379 | 636621 | - | NZ_CP014322.1 | Alteromonas addita |
| 21 | 3512629 | 3512871 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 22 | 519679 | 519972 | + | NZ_CP033078.1 | Vibrio zhugei |
| 23 | 2836274 | 2836555 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 24 | 860094 | 860372 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 25 | 731398 | 731703 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 26 | 1556677 | 1556976 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 27 | 567830 | 568111 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 28 | 969555 | 969839 | + | NZ_CP040990.1 | Vibrio furnissii |
| 29 | 2570138 | 2570440 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 30 | 2284319 | 2284600 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 31 | 993233 | 993514 | + | NC_013456.1 | Vibrio antiquarius |
| 32 | 218170 | 218451 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 33 | 2732686 | 2732949 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 34 | 830560 | 830823 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 35 | 576350 | 576628 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 36 | 2760022 | 2760324 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 37 | 710773 | 711030 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 38 | 781201 | 781458 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 39 | 2916831 | 2917094 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 40 | 2394710 | 2394991 | + | NZ_CP019959.1 | Vibrio owensii |
| 41 | 4706872 | 4707132 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 42 | 1552332 | 1552601 | + | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 43 | 2650329 | 2650616 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 44 | 539291 | 539569 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 45 | 4722905 | 4723165 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 46 | 706783 | 707055 | - | NZ_CP014056.2 | Grimontia hollisae |
| 47 | 2994045 | 2994332 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 48 | 2685787 | 2686068 | - | NZ_CP030788.1 | Vibrio campbellii |
| 49 | 3244600 | 3244881 | - | NZ_CP009467.1 | Vibrio harveyi |
| 50 | 359010 | 359291 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 51 | 3017995 | 3018297 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 52 | 2009213 | 2009464 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 53 | 4326396 | 4326695 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 54 | 4068328 | 4068579 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 55 | 2531229 | 2531516 | + | NZ_CP060092.1 | Teredinibacter purpureus |
| 56 | 1080882 | 1081184 | + | NZ_CP048796.1 | Providencia vermicola |
| 57 | 1783299 | 1783547 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 58 | 474359 | 474640 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 59 | 3646014 | 3646265 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 60 | 613680 | 613922 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 61 | 387389 | 387646 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 62 | 539302 | 539592 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 63 | 433213 | 433494 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 64 | 1092667 | 1092945 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 65 | 3134412 | 3134663 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 66 | 1030924 | 1031223 | + | NZ_CP015581.1 | Tatumella citrea |
| 67 | 779947 | 780225 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 68 | 3883282 | 3883527 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 69 | 866830 | 867126 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 70 | 2355944 | 2356195 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 71 | 1302743 | 1302994 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 72 | 990128 | 990433 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 73 | 1714822 | 1715064 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 74 | 3708434 | 3708676 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 75 | 3365781 | 3366068 | - | NZ_CP061511.1 | Mixta calida |
| 76 | 3574137 | 3574424 | - | NZ_CP026377.1 | Mixta gaviniae |
| 77 | 1058781 | 1059032 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 78 | 3556937 | 3557209 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 79 | 1048874 | 1049119 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 80 | 3877482 | 3877727 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 81 | 746405 | 746710 | - | NZ_CP042218.1 | Luteimonas granuli |
| 82 | 657719 | 657970 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 83 | 3842260 | 3842505 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 84 | 812041 | 812292 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 85 | 1393938 | 1394216 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 86 | 5183406 | 5183648 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 87 | 3870899 | 3871141 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 88 | 2663096 | 2663338 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 89 | 1130956 | 1131198 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 90 | 992158 | 992475 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 91 | 4195418 | 4195735 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 92 | 3357370 | 3357612 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 93 | 1910834 | 1911130 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 94 | 2671357 | 2671599 | - | NZ_CP017482.1 | Pectobacterium polaris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008345.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01128.21 | 0.98 | 92 | 3.5 | same-strand | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
| 2 | PF02542.18 | 0.88 | 83 | 735 | same-strand | YgbB family |
| 3 | PF01975.19 | 0.73 | 69 | 2292 | same-strand | Survival protein SurE |
| 4 | PF01135.21 | 0.82 | 77 | 3064 | same-strand | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) |
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