Result : Q07RW5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein SlyX homolog |
| NCBI Accession ID | CP000463.1 |
| Organism | Rhodopseudomonas palustris (strain BisA53) |
| Left | 1537233 |
| Right | 1537454 |
| Strand | - |
| Nucleotide Sequence | ATGCCCGACAGCGCCCAACCGCTCAGCGAACGCCTCGACGCGCTGGAAATCCGCATCGCCTATCAGGACGAGACCATCGAGACGCTGAACGCCACCATCACCGCGCAGTGGCAGCAGATCGACGCGTTGACGCGGCAAATCAAAGCCTTTCACGACCGGCTGCAGCAAGCCGAGTCCAACGCCCCGGCCGCCCCCGCCAACGAACGCCCGCCGCATTATTGA |
| Sequence | MPDSAQPLSERLDALEIRIAYQDETIETLNATITAQWQQIDALTRQIKAFHDRLQQAESNAPAAPANERPPHY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01090. Profile Description: SlyX. hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412736 |
| Functional Category | Others |
| Uniprot ID | Q07RW5 |
| ORF Length (Amino Acid) | 73 |
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| Conservation Analysis |
No. of Species: 26
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 7472710 | 7472910 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 2 | 5773985 | 5774185 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 3 | 6185862 | 6186041 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 4 | 2554318 | 2554536 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 5 | 1636893 | 1637093 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 6 | 2532327 | 2532545 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 7 | 5652102 | 5652320 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 8 | 4838555 | 4838770 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 9 | 6083952 | 6084170 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 10 | 132616 | 132834 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 11 | 1382995 | 1383213 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 12 | 2412069 | 2412287 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 13 | 864317 | 864535 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 14 | 1234500 | 1234718 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 15 | 6928984 | 6929199 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 16 | 6636368 | 6636586 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 17 | 6445795 | 6445992 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 18 | 4118533 | 4118748 | + | NZ_CP041636.1 | Ferrovibrio terrae |
| 19 | 4743909 | 4744118 | + | NZ_CP016616.1 | Microvirga ossetica |
| 20 | 4710415 | 4710627 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 21 | 1212652 | 1212864 | - | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 22 | 1505676 | 1505897 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 23 | 2429194 | 2429403 | + | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 24 | 5376093 | 5376302 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 25 | 3246068 | 3246280 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 26 | 4280133 | 4280348 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP022221.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01019.23 | 0.65 | 17 | 969 | opposite-strand | Gamma-glutamyltranspeptidase |
| 2 | PF17773.3 | 0.81 | 21 | -7 | same-strand | UPF0176 acylphosphatase like domain |
| 3 | PF00581.22 | 0.81 | 21 | -7 | same-strand | Rhodanese-like domain |
| 4 | PF08448.12 | 0.62 | 16 | 9.0 | opposite-strand | PAS fold |
| 5 | PF01208.19 | 0.62 | 16 | 2407.5 | same-strand | Uroporphyrinogen decarboxylase (URO-D) |
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