Result : Q057I5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S16 |
| NCBI Accession ID | CP000263.1 |
| Organism | Buchnera aphidicola subsp. Cinara cedri (strain Cc) |
| Left | 281409 |
| Right | 281675 |
| Strand | + |
| Nucleotide Sequence | ATGATCAAAATAAGATTATCTAGACATGGAATGAAAAAAAAACCATTTTATCAAATAATTATAGCTAATGTAAGATCCTCTAGAAATGGTAAATTTATTGAACGCGTTGGATTTTTTAATCCTTTTGCCAAAAAAAATGAAGAAAAAATACGAATTTCAACTAAAAGAATACAATATTGGTTAGAAAAAGGAGCTAAAAAAACGAATAGAATTAAAAATTTATTAATACAATTTAAAAAAATATCATCAAATAACATTAAAATATAA |
| Sequence | MIKIRLSRHGMKKKPFYQIIIANVRSSRNGKFIERVGFFNPFAKKNEEKIRISTKRIQYWLEKGAKKTNRIKNLLIQFKKISSNNIKI |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00368. Profile Description: Ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 17038625 |
| Domain | CDD:412339 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q057I5 |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 118
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1369690 | 1369926 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 2 | 148578 | 148826 | - | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 3 | 874601 | 874849 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 4 | 963832 | 964080 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 5 | 3690913 | 3691161 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 6 | 2928240 | 2928482 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 7 | 503980 | 504231 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 8 | 845561 | 845800 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 9 | 313607 | 313855 | + | NZ_CP018804.1 | Histophilus somni |
| 10 | 636755 | 637003 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 11 | 1667701 | 1667952 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 12 | 3257054 | 3257302 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 13 | 5099258 | 5099506 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 14 | 1591246 | 1591509 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 15 | 2355045 | 2355317 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 16 | 1260815 | 1261075 | + | NZ_CP050508.1 | Raoultella terrigena |
| 17 | 129725 | 129973 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 18 | 862626 | 862874 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 19 | 668592 | 668840 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 20 | 3389518 | 3389766 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 21 | 574175 | 574426 | + | NZ_CP015839.1 | Marinobacterium aestuarii |
| 22 | 2808864 | 2809124 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 23 | 872796 | 873041 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 24 | 397949 | 398203 | + | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 25 | 1548771 | 1549019 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 26 | 4695719 | 4695982 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 27 | 4131077 | 4131325 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 28 | 5044573 | 5044821 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 29 | 1706491 | 1706739 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 30 | 2380968 | 2381219 | - | NZ_CP011797.1 | Reinekea forsetii |
| 31 | 1286493 | 1286741 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 32 | 792366 | 792611 | + | NZ_CP025120.1 | Kangiella profundi |
| 33 | 4883910 | 4884170 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 34 | 1040223 | 1040471 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 35 | 1173841 | 1174089 | + | NZ_CP041247.1 | Raoultella electrica |
| 36 | 470623 | 470871 | - | NZ_CP026047.1 | Raoultella planticola |
| 37 | 1223189 | 1223437 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 38 | 3558162 | 3558410 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 39 | 3583374 | 3583622 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 40 | 3561717 | 3561965 | - | NC_015968.1 | Enterobacter soli |
| 41 | 3685843 | 3686091 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 42 | 3661859 | 3662107 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 43 | 4841529 | 4841777 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 44 | 3868906 | 3869154 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 45 | 1456164 | 1456412 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 46 | 3550837 | 3551085 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 47 | 1187814 | 1188062 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 48 | 4838119 | 4838367 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 49 | 15320 | 15568 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 50 | 410569 | 410817 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 51 | 3371537 | 3371785 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 52 | 3521806 | 3522054 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 53 | 1929985 | 1930242 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 54 | 1217545 | 1217793 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 55 | 4086971 | 4087219 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 56 | 1706384 | 1706632 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 57 | 4305676 | 4305924 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 58 | 3672458 | 3672706 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 59 | 1212895 | 1213143 | + | NZ_CP054254.1 | Klebsiella variicola |
| 60 | 2441018 | 2441263 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 61 | 1178480 | 1178728 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 62 | 903635 | 903883 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 2961740 | 2961988 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 64 | 927880 | 928128 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 65 | 805857 | 806105 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 66 | 1369546 | 1369794 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 67 | 668134 | 668382 | - | NZ_CP014056.2 | Grimontia hollisae |
| 68 | 1438006 | 1438257 | + | NZ_CP046378.1 | Shewanella algae |
| 69 | 2762661 | 2762912 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 70 | 2702401 | 2702649 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 71 | 1031584 | 1031832 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 72 | 4029248 | 4029496 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 73 | 2744588 | 2744836 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 74 | 2745937 | 2746185 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 75 | 2715038 | 2715286 | - | NZ_AP014857.1 | Escherichia albertii |
| 76 | 3466190 | 3466438 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 77 | 1197955 | 1198203 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 78 | 3266214 | 3266462 | - | NZ_LR134340.1 | Escherichia marmotae |
| 79 | 1047517 | 1047765 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 80 | 1303295 | 1303543 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 81 | 3862524 | 3862772 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 82 | 22608 | 22856 | - | NZ_LR134167.1 | Avibacterium volantium |
| 83 | 3668264 | 3668512 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 84 | 1437465 | 1437713 | - | NZ_CP033744.1 | Citrobacter freundii |
| 85 | 2816643 | 2816891 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 86 | 2928734 | 2928997 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 87 | 3318020 | 3318268 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 88 | 3663346 | 3663594 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 89 | 4630128 | 4630376 | + | NZ_CP038469.1 | Citrobacter tructae |
| 90 | 4348058 | 4348306 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 91 | 1097495 | 1097743 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 92 | 783351 | 783599 | - | NZ_CP028926.1 | Pasteurella multocida |
| 93 | 1202892 | 1203140 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 94 | 1475422 | 1475661 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 95 | 1673621 | 1673869 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 96 | 1306509 | 1306757 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 97 | 1036066 | 1036314 | + | NZ_CP048796.1 | Providencia vermicola |
| 98 | 418482 | 418721 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 99 | 1008837 | 1009079 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 100 | 3552712 | 3552951 | - | NZ_CP014143.1 | Microbulbifer aggregans |
| 101 | 1100689 | 1100937 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 102 | 1086900 | 1087148 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 103 | 1856451 | 1856699 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 104 | 4472962 | 4473210 | + | NZ_CP028897.1 | Dongshaea marina |
| 105 | 918937 | 919194 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 106 | 4626608 | 4626856 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 107 | 589190 | 589438 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 108 | 974005 | 974253 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 109 | 1038192 | 1038440 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 110 | 4462092 | 4462340 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 111 | 686953 | 687201 | - | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 112 | 1968708 | 1968956 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 113 | 2765777 | 2766025 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 114 | 2615728 | 2615976 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 115 | 705720 | 705968 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 116 | 3371046 | 3371291 | - | NZ_CP020931.1 | Marinobacter salarius |
| 117 | 543484 | 543735 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 118 | 1862547 | 1862810 | + | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 119 | 414937 | 415200 | + | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP021425.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01595.22 | 0.76 | 90 | 2637 | opposite-strand | Cyclin M transmembrane N-terminal domain |
| 2 | PF03471.19 | 0.75 | 89 | 2637.5 | opposite-strand | Transporter associated domain |
| 3 | PF00571.30 | 0.71 | 84 | 2634 | opposite-strand | CBS domain |
| 4 | PF01578.22 | 0.77 | 91 | 1781.0 | opposite-strand | Cytochrome C assembly protein |
| 5 | PF00448.24 | 0.78 | 92 | 247 | same-strand | SRP54-type protein, GTPase domain |
| 6 | PF02978.21 | 0.78 | 92 | 247 | same-strand | Signal peptide binding domain |
| 7 | PF02881.21 | 0.78 | 92 | 247 | same-strand | SRP54-type protein, helical bundle domain |
| 8 | PF01782.20 | 1.0 | 118 | 19 | same-strand | RimM N-terminal domain |
| 9 | PF05239.18 | 0.96 | 113 | 19.0 | same-strand | PRC-barrel domain |
| 10 | PF01746.23 | 0.99 | 117 | 598.0 | same-strand | tRNA (Guanine-1)-methyltransferase |
| 11 | PF01245.22 | 1.0 | 118 | 1398 | same-strand | Ribosomal protein L19 |
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