Result : Q05561
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ferredoxin-like protein |
| NCBI Accession ID | L11082.1 |
| Organism | Rhizobium leguminosarum bv. phaseoli |
| Left | 292 |
| Right | 591 |
| Strand | + |
| Nucleotide Sequence | ATGACGGTTGCAGTGACGAACATACGCGTAGAGGACAAGCTTTACCAAAATCGATACGTGGTCGATGCCGGACGCCCGCATATTAGGGTGCGTCCACACGATTGGCCAAGCGTAAATCTGTATGCCCTCACAAGTGTCTGTCCGGCCAAGTGCTACGAATTGAATGACCAGGGCCAAGTGGAGGTTATCGCCGATGGGTGCATGGAGTGCGGCACGTGCCGCGTACTCTGCGAGGCAAGTGGAGATATCGAGTGGAACTATCCGAGAGGCGGTTTCGGCGTTCTCTTCAAGTTCGGATAA |
| Sequence | MTVAVTNIRVEDKLYQNRYVVDAGRPHIRVRPHDWPSVNLYALTSVCPAKCYELNDQGQVEVIADGCMECGTCRVLCEASGDIEWNYPRGGFGVLFKFG |
| Source of smORF | Swiss-Prot |
| Function | Could be a 3Fe-4S cluster-containing protein. |
| Pubmed ID | 8369342 |
| Domain | CDD:418523 |
| Functional Category | Metal-binding |
| Uniprot ID | Q05561 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 76
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 308891 | 309190 | + | NZ_CP013502.1 | Rhizobium esperanzae |
| 2 | 305044 | 305343 | + | NZ_CP013535.1 | Rhizobium phaseoli |
| 3 | 580345 | 580644 | + | NZ_CP034999.1 | Rhizobium acidisoli |
| 4 | 282137 | 282436 | + | NZ_CP020910.1 | Rhizobium etli |
| 5 | 224312 | 224611 | - | NZ_CP006879.1 | Rhizobium gallicum bv. gallicum R602sp |
| 6 | 95315 | 95614 | - | NZ_CP013109.1 | Sinorhizobium americanum |
| 7 | 349615 | 349914 | + | NZ_CP041240.1 | Ensifer mexicanus |
| 8 | 69076 | 69375 | + | NZ_CP050299.1 | Mesorhizobium huakuii |
| 9 | 258239 | 258538 | - | NC_020061.1 | Rhizobium tropici CIAT 899 |
| 10 | 5969913 | 5970212 | + | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 11 | 6595624 | 6595923 | + | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 12 | 4732290 | 4732589 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 13 | 541122 | 541418 | + | NZ_CP015322.1 | Mesorhizobium amorphae CCNWGS0123 |
| 14 | 217589 | 217888 | - | NZ_CP032696.1 | Rhizobium jaguaris |
| 15 | 6357882 | 6358181 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 16 | 6721743 | 6722042 | + | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 17 | 1026202 | 1026501 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 18 | 346560 | 346856 | + | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 19 | 447400 | 447696 | - | NC_020527.1 | Sinorhizobium meliloti 2011 |
| 20 | 437813 | 438106 | + | NZ_CP034911.1 | Ensifer alkalisoli |
| 21 | 225695 | 225988 | - | NZ_CP029453.1 | Sinorhizobium fredii CCBAU 25509 |
| 22 | 239085 | 239378 | - | NZ_CP023069.1 | Ensifer sojae CCBAU 05684 |
| 23 | 166719 | 167015 | - | NZ_CP071458.1 | Rhizobium lentis |
| 24 | 192203 | 192499 | + | NZ_CP071608.1 | Rhizobium binae |
| 25 | 102634 | 102930 | - | NZ_CP071610.1 | Rhizobium binae |
| 26 | 152273 | 152569 | + | NZ_CP071615.1 | Rhizobium bangladeshense |
| 27 | 313664 | 313960 | - | NZ_CP071682.1 | Rhizobium ruizarguesonis |
| 28 | 213139 | 213435 | + | NZ_CP054024.1 | Rhizobium indicum |
| 29 | 193733 | 194029 | - | NZ_CP054030.1 | Rhizobium hidalgonense |
| 30 | 1093476 | 1093772 | + | NZ_HG938354.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 31 | 4084672 | 4084956 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 32 | 218701 | 218979 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 33 | 5552996 | 5553292 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 34 | 4682626 | 4682922 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 35 | 5662318 | 5662596 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 36 | 4013464 | 4013754 | + | NZ_CP044331.1 | Methylocystis parvus |
| 37 | 1812311 | 1812601 | - | NZ_CP044331.1 | Methylocystis parvus |
| 38 | 5332923 | 5333201 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 39 | 1291953 | 1292258 | + | NZ_AP018907.1 | Blastochloris tepida |
| 40 | 4411380 | 4411667 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 41 | 1168209 | 1168487 | + | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 42 | 550769 | 551041 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 43 | 2508485 | 2508727 | + | NZ_CP012946.1 | Blastochloris viridis |
| 44 | 1700207 | 1700506 | + | NZ_CP025086.1 | Methylovirgula ligni |
| 45 | 3979578 | 3979871 | - | NC_011666.1 | Methylocella silvestris BL2 |
| 46 | 5050384 | 5050680 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 47 | 3965997 | 3966290 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 48 | 1014715 | 1014993 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 49 | 1868783 | 1869061 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 50 | 1757573 | 1757851 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 51 | 1679436 | 1679729 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 52 | 3233638 | 3233910 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 53 | 2159764 | 2160042 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 54 | 394038 | 394280 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 55 | 1111172 | 1111456 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 56 | 7098382 | 7098660 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 57 | 1730935 | 1731231 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 58 | 1235530 | 1235808 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 59 | 1273311 | 1273610 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 60 | 2631566 | 2631862 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 61 | 732973 | 733269 | + | NZ_CP022220.1 | Bradyrhizobium guangxiense |
| 62 | 525405 | 525701 | + | NZ_CP030054.1 | Bradyrhizobium guangzhouense |
| 63 | 345812 | 346108 | + | NZ_CP030052.1 | Bradyrhizobium guangdongense |
| 64 | 3192488 | 3192730 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 65 | 2624949 | 2625233 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 66 | 1389222 | 1389506 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 67 | 1820121 | 1820405 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 68 | 255455 | 255736 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 69 | 26571 | 26816 | + | NZ_CP022991.1 | Paraburkholderia aromaticivorans |
| 70 | 1788693 | 1788938 | + | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 71 | 412870 | 413154 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 72 | 2425814 | 2426098 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 73 | 429869 | 430165 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 74 | 3688041 | 3688328 | - | NZ_CP030265.1 | Skermanella pratensis |
| 75 | 999872 | 1000156 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 76 | 884479 | 884766 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 77 | 3169231 | 3169530 | + | NZ_CP016210.1 | Azoarcus olearius |
| 78 | 464789 | 465031 | + | NZ_CP037899.1 | Methylacidiphilum kamchatkense Kam1 |
| 79 | 67286 | 67573 | - | NZ_CP014671.1 | Immundisolibacter cernigliae |
| 80 | 1454140 | 1454418 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013502.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03206.16 | 0.82 | 62 | 3484.5 | same-strand | Nitrogen fixation protein NifW |
| 2 | PF01012.23 | 1.0 | 76 | 1458.5 | same-strand | Electron transfer flavoprotein domain |
| 3 | PF00766.21 | 0.99 | 75 | 1336 | same-strand | Electron transfer flavoprotein FAD-binding domain |
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