ProsmORF-pred
Result : Q04GL9
Protein Information
Information Type Description
Protein name 50S ribosomal protein L28
NCBI Accession ID CP000411.1
Organism Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
Left 431813
Right 432013
Strand +
Nucleotide Sequence ATGGCAAAAGATGCTATTACTGGCGCGCGTACTCGTTTTGGTAATCAACGTTCACACGCTTTGAATGCCAATCGTCGTTCGTGGAAGCCGAATTTGCAAAAAGTGACCGTTAAAATCAATGGCGACGCTGCCAAAACCGTTTATCTGACTGCTCGTACTTTACGTGCAGGCTTGAAGAACGGTTCGATCGAACGAGTATAA
Sequence MAKDAITGARTRFGNQRSHALNANRRSWKPNLQKVTVKINGDAAKTVYLTARTLRAGLKNGSIERV
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID 17030793
Domain CDD:412338
Functional Category Ribosomal_protein
Uniprot ID Q04GL9
ORF Length (Amino Acid) 66
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Conservation Analysis
Conservation Analysis
No. of Species: 186
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 396579 396779 + NZ_CP014324.1 Oenococcus oeni
2 981218 981418 + NZ_CP029684.2 Oenococcus sicerae
3 1174115 1174315 - NZ_CP042410.1 Leuconostoc citreum
4 1554015 1554215 - NZ_CP065993.1 Leuconostoc pseudomesenteroides
5 202546 202746 + NZ_CP028251.1 Leuconostoc mesenteroides
6 1446143 1446343 - NZ_CP015247.1 Leuconostoc suionicum
7 1488628 1488828 + NZ_CP042374.1 Leuconostoc carnosum
8 1323903 1324103 - NC_018631.1 Leuconostoc gelidum JB7
9 456212 456412 - NC_014136.1 Leuconostoc kimchii IMSNU 11154
10 1192407 1192607 - NZ_CP017326.1 Weissella soli
11 726078 726278 + NZ_CP027563.1 Weissella confusa
12 585147 585347 + NZ_CP061835.1 Weissella viridescens
13 2575970 2576170 + NZ_CP037940.1 Weissella cryptocerci
14 374626 374826 + NZ_CP023501.1 Weissella paramesenteroides
15 1452911 1453111 - NZ_CP014332.1 Weissella jogaejeotgali
16 1025886 1026071 - NZ_AP014680.1 Paucilactobacillus hokkaidonensis JCM 18461
17 880840 881025 - NZ_LN898144.1 Paucilactobacillus oligofermentans DSM 15707 = LMG 22743
18 1087410 1087595 - NZ_CP045530.1 Limosilactobacillus pontis
19 1148792 1148977 - NZ_CP045240.1 Limosilactobacillus vaginalis
20 1257954 1258139 - NZ_CP045605.1 Limosilactobacillus reuteri
21 1038123 1038308 - NZ_CP044534.1 Limosilactobacillus frumenti
22 655272 655457 - NZ_CP045563.1 Fructilactobacillus sanfranciscensis
23 1104528 1104713 + NZ_CP014872.1 Fructilactobacillus lindneri
24 1757692 1757877 + NZ_CP047121.1 Lentilactobacillus hilgardii
25 2356178 2356363 - NZ_CP018796.1 Lentilactobacillus parabuchneri
26 2125798 2125983 + NZ_CP059603.1 Levilactobacillus suantsaii
27 2112492 2112677 + NZ_CP029971.1 Lentilactobacillus kefiri
28 1995584 1995769 + NZ_CP042371.1 Secundilactobacillus malefermentans
29 2944700 2944885 + NZ_CP012033.1 Levilactobacillus koreensis
30 1823264 1823449 - NZ_CP018906.1 Lentilactobacillus curieae
31 607736 607921 - NZ_CP045562.1 Fructilactobacillus fructivorans
32 1257182 1257367 + NZ_CP045007.1 Latilactobacillus graminis
33 224916 225101 - NZ_CP026116.1 Latilactobacillus curvatus JCM 1096 = DSM 20019
34 1492141 1492326 - NZ_CP046037.1 Latilactobacillus sakei
35 1050120 1050305 + NC_016605.1 Pediococcus claussenii ATCC BAA-344
36 720166 720351 - NZ_CP032626.1 Apilactobacillus bombintestini
37 1083112 1083297 - NZ_LS483405.1 Levilactobacillus brevis
38 414674 414859 - NZ_CP031513.1 Bombilactobacillus bombi
39 2899569 2899754 + NZ_CP014912.1 Secundilactobacillus paracollinoides
40 841666 841851 - NC_008525.1 Pediococcus pentosaceus ATCC 25745
41 1279912 1280097 - NZ_CP040586.1 Furfurilactobacillus rossiae
42 881882 882067 - NZ_CP053421.1 Pediococcus acidilactici
43 1151421 1151606 + NZ_CP024610.1 Lactobacillus terrae
44 1202016 1202201 + NZ_CP034726.1 Acetilactobacillus jinshanensis
45 865557 865742 - NZ_CP017996.1 Companilactobacillus crustorum
46 1367539 1367724 + NZ_CP049366.1 Companilactobacillus pabuli
47 1741537 1741722 - NZ_CP019323.1 Companilactobacillus allii
48 1106351 1106536 - NZ_CP017702.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184
49 1236373 1236558 + NZ_CP044499.1 Lapidilactobacillus dextrinicus
50 1699919 1700104 - NZ_CP032757.1 Lactiplantibacillus pentosus
51 1082906 1083091 - NZ_CP030105.1 Lactiplantibacillus plantarum
52 666355 666540 + NZ_CP012034.1 Companilactobacillus ginsenosidimutans
53 1520615 1520800 + NZ_CP012559.1 Companilactobacillus heilongjiangensis
54 1222923 1223108 + NZ_CP029477.1 Lactobacillus kullabergensis
55 1892150 1892335 - NZ_CP012294.1 Pediococcus damnosus
56 730588 730773 - NZ_CP019981.1 Pediococcus inopinatus
57 1008474 1008659 - NZ_CP040736.1 Companilactobacillus futsaii
58 985089 985274 + NZ_CP029476.1 Lactobacillus apis
59 1139596 1139781 + NZ_CP029544.1 Lactobacillus helsingborgensis
60 1056793 1056978 + NZ_CP041364.1 Schleiferilactobacillus harbinensis
61 131783 131968 + NZ_CP018888.1 Amylolactobacillus amylophilus DSM 20533 = JCM 1125
62 1712880 1713065 + NZ_CP017713.1 Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001
63 1195350 1195535 + NZ_AP019750.1 Lactobacillus delbrueckii subsp. delbrueckii
64 727175 727360 - NZ_CP059276.1 Lactobacillus taiwanensis
65 746049 746234 - NC_008530.1 Lactobacillus gasseri ATCC 33323 = JCM 1131
66 739862 740047 - NZ_AP018549.1 Lactobacillus paragasseri
67 1516090 1516275 + NZ_CP018180.1 Liquorilactobacillus nagelii
68 1292898 1293083 + NC_021181.2 Lactobacillus acidophilus La-14
69 840901 841086 - NZ_CP047141.1 Ligilactobacillus animalis
70 1076181 1076366 + NZ_CP015444.1 Lactobacillus helveticus
71 806397 806582 - NZ_CP061341.1 Lactobacillus kefiranofaciens
72 656906 657091 - NZ_CP044496.1 Lactobacillus acetotolerans
73 1413997 1414182 - NZ_CP015438.1 Anoxybacillus amylolyticus
74 2112411 2112599 + NZ_CP017962.1 Virgibacillus halodenitrificans
75 860977 861162 - NZ_CP059829.1 Lactobacillus ultunensis
76 599909 600094 - NZ_CP064060.1 Anoxybacillus caldiproteolyticus
77 654243 654428 - NZ_CP011403.1 Ligilactobacillus salivarius str. Ren
78 741361 741546 - NZ_CP018809.1 Lactobacillus jensenii
79 2171886 2172071 + NZ_CP014342.1 Geobacillus subterraneus
80 1022904 1023089 - NZ_CP012152.1 Anoxybacillus gonensis
81 1776133 1776321 - NZ_CP024848.1 Oceanobacillus zhaokaii
82 1557486 1557674 - NC_004193.1 Oceanobacillus iheyensis HTE831
83 621320 621508 - NZ_CP049886.1 Vagococcus coleopterorum
84 3413703 3413876 + NZ_CP017703.1 Aeribacillus pallidus
85 1964093 1964281 - NZ_CP049740.1 Jeotgalibaca arthritidis
86 1652102 1652290 - NZ_CP023704.1 Caldibacillus thermoamylovorans
87 1552780 1552965 - NZ_AP012544.1 Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
88 1556811 1556996 - NZ_LS991421.1 Lacticaseibacillus zeae
89 1201324 1201509 - NC_006510.1 Geobacillus kaustophilus HTA426
90 287203 287388 - NZ_CP061470.1 Geobacillus zalihae
91 2781397 2781582 + NZ_CP018058.1 Geobacillus thermocatenulatus
92 649173 649358 - NZ_CP061472.1 Geobacillus thermoleovorans
93 1555488 1555676 - NZ_CP011102.1 Listeria weihenstephanensis
94 2806838 2807023 + NZ_CP070511.1 Parageobacillus toebii
95 1280559 1280744 + NZ_CP068053.1 Peribacillus psychrosaccharolyticus
96 2390643 2390831 + NZ_CP016020.1 Bacillus weihaiensis
97 1849132 1849320 + NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954
98 1864584 1864772 + NZ_LT906444.1 Listeria welshimeri
99 1944901 1945089 + NZ_CP009577.1 Listeria ivanovii subsp. ivanovii
100 1890951 1891139 + NC_003210.1 Listeria monocytogenes EGD-e
101 1033024 1033212 - NZ_LR134483.1 Listeria grayi
102 1575276 1575461 + NC_014334.2 Lacticaseibacillus paracasei
103 2602418 2602606 + NZ_CP024109.1 Bacillus cytotoxicus
104 1259190 1259378 - NZ_CP008876.1 Terribacillus goriensis
105 3928834 3929022 + NZ_CP018622.1 Virgibacillus dokdonensis
106 2380189 2380377 - NZ_CP023643.1 Brochothrix thermosphacta
107 4202787 4202975 - NZ_CP030926.1 Peribacillus butanolivorans
108 977740 977928 + NZ_CP017704.1 Peribacillus simplex NBRC 15720 = DSM 1321
109 1734156 1734344 + NZ_CP016843.1 Carnobacterium divergens
110 2642304 2642492 + NZ_CP022437.1 Virgibacillus necropolis
111 1485208 1485396 - NZ_CP040336.1 Bacillus luti
112 3744098 3744286 + NZ_CP064875.1 Bacillus toyonensis
113 3879142 3879330 + NC_011725.1 Bacillus cereus B4264
114 3883376 3883564 + NZ_CP032365.1 Bacillus wiedmannii
115 119632 119820 - NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
116 1578732 1578920 + NC_018704.1 Amphibacillus xylanus NBRC 15112
117 562407 562595 - NZ_CP019728.1 Jeotgalibaca dankookensis
118 1536951 1537139 - NZ_CP041666.1 Radiobacillus deserti
119 1761480 1761668 - NC_006270.3 Bacillus licheniformis DSM 13 = ATCC 14580
120 1784087 1784275 - NZ_CP023665.1 Bacillus paralicheniformis
121 1783458 1783646 - NZ_LT603683.1 Bacillus glycinifermentans
122 1610321 1610509 - NZ_CP053376.1 Bacillus amyloliquefaciens
123 1833955 1834143 - NZ_CP033052.1 Bacillus vallismortis
124 1562995 1563183 - NZ_CP048852.1 Bacillus tequilensis
125 1659695 1659883 - NZ_CP051464.1 Bacillus mojavensis
126 1622135 1622323 - NZ_CP034943.1 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499
127 1628466 1628654 - NZ_CP013984.1 Bacillus inaquosorum
128 330337 330525 + NZ_CP029364.1 Bacillus halotolerans
129 1655599 1655787 - NC_000964.3 Bacillus subtilis subsp. subtilis str. 168
130 2586038 2586226 + NZ_CP018866.1 Sutcliffiella cohnii
131 581916 582104 - NC_022549.1 Acholeplasma brassicae
132 1528200 1528388 - NZ_CP009416.1 Jeotgalibacillus malaysiensis
133 3674546 3674734 + NC_007530.2 Bacillus anthracis str. 'Ames Ancestor'
134 2591416 2591604 + NZ_CP065425.1 Heyndrickxia vini
135 3295043 3295231 + NZ_CP014616.1 Sporosarcina psychrophila
136 1026286 1026474 - NZ_CP006837.1 Lysinibacillus varians
137 3644295 3644483 + NZ_CP019980.1 Lysinibacillus sphaericus
138 2350636 2350824 + NZ_CP011937.1 Bacillus velezensis
139 254754 254942 - NC_010163.1 Acholeplasma laidlawii PG-8A
140 166392 166580 + NZ_CP022983.1 Cytobacillus kochii
141 966221 966409 - NZ_LR134484.1 Gemella haemolysans
142 3769975 3770163 + NZ_CP010820.1 Lysinibacillus fusiformis
143 1480644 1480832 + NZ_CP022046.2 Mammaliicoccus sciuri
144 1449307 1449495 - NZ_CP031223.1 Psychrobacillus glaciei
145 2139406 2139594 - NZ_CP053989.1 Niallia circulans
146 1917137 1917325 - NC_017668.1 Halobacillus halophilus DSM 2266
147 313436 313624 - NZ_CP014159.1 Aerococcus christensenii
148 1678092 1678283 + NZ_LR215048.1 Acholeplasma axanthum
149 1559822 1560010 + NZ_LT906462.1 Mammaliicoccus stepanovicii
150 2748885 2749073 + NC_014829.1 Evansella cellulosilytica DSM 2522
151 434578 434766 - NC_022538.1 Acholeplasma palmae J233
152 2687940 2688128 + NZ_LS483476.1 Lederbergia lentus
153 2124859 2125047 + NZ_CP012047.1 Tetragenococcus halophilus
154 138705 138893 + NZ_LR134512.1 Streptococcus agalactiae
155 16038 16226 + NZ_LT906439.1 Streptococcus merionis
156 370417 370605 + NZ_LR594050.1 Streptococcus porcinus
157 870113 870301 - NZ_LR134341.1 Streptococcus pseudoporcinus
158 672502 672690 - NZ_CP068061.1 Mammaliicoccus vitulinus
159 2079700 2079888 + NZ_LS483306.1 Enterococcus cecorum
160 776671 776859 + NZ_CP043405.1 Streptococcus ratti
161 552385 552573 - NZ_CP015196.1 Streptococcus marmotae
162 2294907 2295095 + NZ_CP021874.1 Enterococcus wangshanyuanii
163 1789757 1789945 - NZ_LR594049.1 Streptococcus gordonii
164 1640878 1641066 - NZ_LS483383.1 Streptococcus cristatus ATCC 51100
165 2086503 2086691 - NZ_CP031733.1 Streptococcus chenjunshii
166 263405 263593 + NZ_LS483403.1 Streptococcus lutetiensis
167 1081359 1081547 + NZ_CP054015.1 Streptococcus gallolyticus
168 1684440 1684628 - NZ_LR134336.1 Streptococcus oralis ATCC 35037
169 82815 83003 + NZ_CP032621.1 Streptococcus gwangjuense
170 201601 201789 - NZ_CP032620.1 Streptococcus koreensis
171 653849 654037 + NZ_CP022680.1 Streptococcus respiraculi
172 314219 314407 + NZ_AP018400.1 Streptococcus ruminantium
173 325811 325999 + NC_012924.1 Streptococcus suis SC84
174 489565 489753 + NC_015875.1 Streptococcus pseudopneumoniae IS7493
175 208946 209134 - NZ_CP016953.1 Streptococcus himalayensis
176 276006 276194 - NC_020995.1 Enterococcus casseliflavus EC20
177 1681873 1682061 - NZ_CP014699.1 Streptococcus pantholopis
178 2413916 2414104 + NZ_AP022822.1 Enterococcus saigonensis
179 1869768 1869956 + NC_017581.1 Streptococcus thermophilus JIM 8232
180 2623607 2623795 - NZ_CP009286.1 Paenibacillus stellifer
181 561076 561264 + NZ_CP023011.2 Enterococcus hirae
182 1143978 1144163 - NZ_AP019309.1 Intestinibaculum porci
183 236882 237070 + NZ_LS483343.1 Streptococcus ferus
184 1482149 1482337 - NZ_CP013237.1 Streptococcus mutans
185 127560 127748 + NZ_AP014612.1 Streptococcus troglodytae
186 847620 847811 - NC_002771.1 Mycoplasmopsis pulmonis UAB CTIP
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP017326.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF03780.15 0.92 171 236 opposite-strand Asp23 family, cell envelope-related function
2 PF13684.8 0.95 176 628.0 opposite-strand Dihydroxyacetone kinase family
3 PF02734.19 0.94 175 628 opposite-strand DAK2 domain
4 PF00271.33 0.72 133 2568 opposite-strand Helicase conserved C-terminal domain
5 PF00270.31 0.73 135 2568 opposite-strand DEAD/DEAH box helicase
6 PF17191.6 0.71 132 2582.5 opposite-strand RecG wedge domain
7 PF04851.17 0.73 135 2568 opposite-strand Type III restriction enzyme, res subunit
8 PF04263.18 0.77 143 221 opposite-strand Thiamin pyrophosphokinase, catalytic domain
9 PF04265.16 0.69 128 222.0 opposite-strand Thiamin pyrophosphokinase, vitamin B1 binding domain
10 PF00834.21 0.76 141 938 opposite-strand Ribulose-phosphate 3 epimerase family
11 PF03193.18 0.78 145 1596 opposite-strand RsgA GTPase
12 PF16745.7 0.76 141 1597 opposite-strand RsgA N-terminal domain
13 PF00069.27 0.7 130 2515.0 opposite-strand Protein kinase domain
14 PF07714.19 0.7 130 2515.0 opposite-strand Protein tyrosine and serine/threonine kinase
15 PF03793.21 0.7 130 2515.0 opposite-strand PASTA domain
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