Result : Q04G68
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | CP000411.1 |
| Organism | Oenococcus oeni (strain ATCC BAA-331 / PSU-1) |
| Left | 581658 |
| Right | 581843 |
| Strand | + |
| Nucleotide Sequence | ATGGCAGATTTAAAAATTACTTTAATTAAAAGCATAGTTCATCGTGAGCCTCGTCAACGAGAGATTGCAAAGTCTCTTGGCTTGGGTCGTGTTCACTCTTCTGTTGTTCGCCCAGATAATGCTGCGACTCGTGGTATCATTTTTAAGATTGCTCATCTTGTTTCGGTTGAGGAGGTTAACAAATAA |
| Sequence | MADLKITLIKSIVHREPRQREIAKSLGLGRVHSSVVRPDNAATRGIIFKIAHLVSVEEVNK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 17030793 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q04G68 |
| ORF Length (Amino Acid) | 61 |
++ More..
| Conservation Analysis |
No. of Species: 334
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 551255 | 551440 | + | NZ_CP014324.1 | Oenococcus oeni |
| 2 | 1106821 | 1107003 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 3 | 401965 | 402150 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 4 | 1959446 | 1959628 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 5 | 1709544 | 1709726 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 6 | 168678 | 168860 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 7 | 358720 | 358905 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 8 | 410275 | 410460 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 9 | 346114 | 346296 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 10 | 341410 | 341592 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 11 | 344356 | 344538 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 12 | 1520190 | 1520372 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 13 | 1290399 | 1290581 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 14 | 1852016 | 1852198 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 15 | 298969 | 299154 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 16 | 569376 | 569558 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 17 | 801259 | 801441 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 18 | 278102 | 278287 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 19 | 362197 | 362382 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 20 | 1276166 | 1276348 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 21 | 534497 | 534679 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 22 | 1542651 | 1542836 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 23 | 398181 | 398366 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 24 | 2103816 | 2103998 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 25 | 1394818 | 1395000 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 26 | 796978 | 797163 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 27 | 1560054 | 1560236 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 28 | 2398002 | 2398187 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 29 | 2439138 | 2439323 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 30 | 2439077 | 2439262 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 31 | 1506293 | 1506475 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 32 | 278466 | 278648 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 33 | 520798 | 520980 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 34 | 1094355 | 1094540 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 35 | 405892 | 406074 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 36 | 1373856 | 1374041 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 37 | 1463128 | 1463313 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 38 | 1372665 | 1372850 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 39 | 1436325 | 1436510 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 40 | 1313472 | 1313654 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 41 | 227309 | 227494 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 42 | 1346415 | 1346600 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 43 | 599883 | 600068 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 44 | 1559934 | 1560116 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 45 | 1384442 | 1384624 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 46 | 555200 | 555382 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 47 | 422135 | 422320 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 48 | 1256730 | 1256912 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 49 | 1069710 | 1069892 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 50 | 142769 | 142954 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 51 | 631974 | 632159 | + | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 52 | 432496 | 432678 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 53 | 452294 | 452479 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 54 | 1001181 | 1001366 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 55 | 185636 | 185821 | + | NZ_CP061835.1 | Weissella viridescens |
| 56 | 1768948 | 1769130 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 57 | 40541 | 40726 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 58 | 1796077 | 1796262 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 59 | 129618 | 129803 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 60 | 2259055 | 2259240 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 61 | 314729 | 314914 | + | NZ_CP027563.1 | Weissella confusa |
| 62 | 191303 | 191488 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 63 | 458127 | 458312 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 64 | 2220876 | 2221058 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 65 | 2388885 | 2389067 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 66 | 108596 | 108781 | + | NZ_CP017326.1 | Weissella soli |
| 67 | 297739 | 297921 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 68 | 920698 | 920883 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 69 | 1707829 | 1708014 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 70 | 2091650 | 2091835 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 71 | 2017236 | 2017421 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 72 | 1804813 | 1804998 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 73 | 1561304 | 1561486 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 74 | 1274061 | 1274246 | - | NZ_CP029476.1 | Lactobacillus apis |
| 75 | 99952 | 100137 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 76 | 335944 | 336126 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 77 | 852021 | 852203 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 78 | 1418379 | 1418561 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 79 | 746485 | 746667 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 80 | 78836 | 79018 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 81 | 1747377 | 1747559 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 82 | 2936 | 3118 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 83 | 300101 | 300283 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 84 | 6124320 | 6124499 | - | NZ_AP019400.1 | Cohnella abietis |
| 85 | 63831 | 64013 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 86 | 90319 | 90501 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 87 | 1165111 | 1165293 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 88 | 276032 | 276214 | + | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 89 | 73270 | 73452 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 90 | 84888 | 85067 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 91 | 78356 | 78538 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 92 | 115483 | 115665 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 93 | 499783 | 499965 | - | NZ_LR134293.1 | Streptococcus canis |
| 94 | 1973321 | 1973500 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 95 | 1710606 | 1710788 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 96 | 1774964 | 1775146 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 97 | 1479882 | 1480064 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 98 | 100138 | 100320 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 99 | 1835135 | 1835317 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 100 | 1853312 | 1853494 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 101 | 485928 | 486110 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 102 | 2055351 | 2055530 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 103 | 2174875 | 2175054 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 104 | 498138 | 498320 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 105 | 3433869 | 3434048 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 106 | 444137 | 444319 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 107 | 1269202 | 1269390 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 108 | 1827977 | 1828159 | - | NZ_LT906439.1 | Streptococcus merionis |
| 109 | 146225 | 146407 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 110 | 94483 | 94665 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 111 | 2148594 | 2148773 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 112 | 2426065 | 2426244 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 113 | 1755639 | 1755821 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 114 | 2029754 | 2029936 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 115 | 74995 | 75174 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 116 | 77697 | 77876 | + | NZ_CP065211.1 | Enterococcus lactis |
| 117 | 281413 | 281598 | - | NZ_CP026363.1 | Brevibacillus agri |
| 118 | 1908050 | 1908232 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 119 | 2542974 | 2543141 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 120 | 2575324 | 2575506 | + | NZ_CP070062.1 | Coprococcus comes |
| 121 | 1528423 | 1528608 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 122 | 668910 | 669095 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 123 | 81649 | 81831 | + | NC_012924.1 | Streptococcus suis SC84 |
| 124 | 82883 | 83065 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 125 | 677303 | 677485 | + | NZ_CP043405.1 | Streptococcus ratti |
| 126 | 70918 | 71100 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 127 | 70590 | 70769 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 128 | 77387 | 77566 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 129 | 1757710 | 1757892 | + | NZ_CP013237.1 | Streptococcus mutans |
| 130 | 3165955 | 3166134 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 131 | 581987 | 582166 | - | NZ_CP023011.2 | Enterococcus hirae |
| 132 | 114343 | 114525 | + | NZ_LS483343.1 | Streptococcus ferus |
| 133 | 1168559 | 1168741 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 134 | 1689800 | 1689982 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 135 | 1643399 | 1643584 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 136 | 6739809 | 6739994 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 137 | 1824993 | 1825172 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 138 | 453830 | 453991 | + | NZ_LN614830.1 | Tatlockia micdadei |
| 139 | 1610282 | 1610464 | - | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 140 | 6275615 | 6275800 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 141 | 240340 | 240519 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 142 | 2593878 | 2594057 | - | NZ_LR134483.1 | Listeria grayi |
| 143 | 1307381 | 1307560 | + | NZ_LS483464.1 | Corynebacterium renale |
| 144 | 392334 | 392513 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 145 | 852800 | 852979 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 146 | 261196 | 261375 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 147 | 1945375 | 1945554 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 148 | 230546 | 230725 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 149 | 499940 | 500119 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 150 | 974441 | 974608 | - | NZ_CP049255.1 | Microbacterium endophyticum |
| 151 | 407569 | 407754 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 152 | 207849 | 208031 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 153 | 80036 | 80218 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 154 | 4127024 | 4127206 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 155 | 2348023 | 2348202 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 156 | 644800 | 644979 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 157 | 155208 | 155390 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 158 | 1185555 | 1185734 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 159 | 1426472 | 1426651 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 160 | 754595 | 754780 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 161 | 2769612 | 2769797 | - | NZ_CP031425.1 | Microbacterium foliorum |
| 162 | 344944 | 345102 | + | NZ_LN681225.1 | Legionella hackeliae |
| 163 | 659886 | 660071 | + | NZ_LT906442.1 | Legionella waltersii |
| 164 | 2814396 | 2814575 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 165 | 1195767 | 1195949 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 166 | 1286618 | 1286797 | + | NZ_CP027770.1 | Staphylococcus felis |
| 167 | 5457518 | 5457697 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 168 | 4395107 | 4395292 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 169 | 1612371 | 1612541 | - | NZ_CP013661.2 | Planococcus kocurii |
| 170 | 5013225 | 5013410 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 171 | 138162 | 138332 | + | NZ_CP016540.2 | Planococcus versutus |
| 172 | 449485 | 449670 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 173 | 903572 | 903760 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 174 | 1686555 | 1686740 | + | NZ_AP014945.1 | Caldimicrobium thiodismutans |
| 175 | 5523691 | 5523870 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 176 | 150190 | 150360 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 177 | 5850771 | 5850953 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 178 | 150336 | 150506 | + | NZ_CP019401.1 | Planococcus faecalis |
| 179 | 1378580 | 1378765 | - | NZ_CP049253.1 | Microbacterium amylolyticum |
| 180 | 258444 | 258626 | + | NZ_CP053989.1 | Niallia circulans |
| 181 | 2962250 | 2962411 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 182 | 1138818 | 1138997 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 183 | 3335970 | 3336152 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 184 | 852944 | 853123 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 185 | 3531008 | 3531187 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 186 | 1696652 | 1696831 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 187 | 147811 | 147993 | + | NZ_CP016538.2 | Planococcus maritimus |
| 188 | 147652 | 147834 | + | NZ_CP059540.1 | Planococcus maritimus |
| 189 | 2592523 | 2592702 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 190 | 2718408 | 2718587 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 191 | 2697267 | 2697446 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 192 | 387160 | 387339 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 193 | 1470291 | 1470473 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 194 | 2300503 | 2300682 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 195 | 761624 | 761809 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 196 | 4683609 | 4683794 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 197 | 2918449 | 2918616 | - | NZ_CP018762.1 | Microbacterium aurum |
| 198 | 147183 | 147365 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 199 | 170324 | 170494 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 200 | 3990865 | 3991050 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 201 | 789546 | 789734 | + | NC_013525.1 | Thermobaculum terrenum ATCC BAA-798 |
| 202 | 2602841 | 2603020 | - | NZ_LT906444.1 | Listeria welshimeri |
| 203 | 3627321 | 3627500 | - | NZ_CP033433.1 | Cohnella candidum |
| 204 | 5290675 | 5290860 | - | NZ_CP009288.1 | Paenibacillus durus |
| 205 | 263320 | 263478 | + | NZ_LT906451.1 | Legionella lansingensis |
| 206 | 1674838 | 1675017 | + | NZ_LR134352.1 | Nocardia asteroides |
| 207 | 420755 | 420940 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 208 | 3912234 | 3912416 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 209 | 154850 | 155020 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 210 | 226624 | 226809 | + | NZ_CP058670.1 | Chryseoglobus indicus |
| 211 | 638828 | 639013 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 212 | 2807055 | 2807234 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 213 | 5572386 | 5572565 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 214 | 240417 | 240596 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 215 | 3277335 | 3277517 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 216 | 3492644 | 3492829 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 217 | 115255 | 115434 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 218 | 326138 | 326320 | + | NZ_CP028129.1 | Rathayibacter rathayi |
| 219 | 5051157 | 5051336 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 220 | 2195478 | 2195657 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 221 | 4694783 | 4694962 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 222 | 375783 | 375941 | - | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 223 | 498401 | 498568 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 224 | 776672 | 776851 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 225 | 1098884 | 1099063 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 226 | 730042 | 730221 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 227 | 796735 | 796914 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 228 | 2013654 | 2013836 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 229 | 246298 | 246477 | + | NZ_CP047361.1 | Macrococcus canis |
| 230 | 3991120 | 3991302 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 231 | 2741311 | 2741493 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 232 | 5609639 | 5609821 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 233 | 1994621 | 1994800 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 234 | 681012 | 681179 | - | NZ_CP061344.1 | Microbacterium hominis |
| 235 | 556362 | 556547 | + | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 236 | 500754 | 500939 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 237 | 509591 | 509773 | + | NZ_CP030280.1 | Blautia argi |
| 238 | 3067025 | 3067210 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 239 | 1990619 | 1990798 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 240 | 4743980 | 4744162 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 241 | 4111107 | 4111286 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 242 | 2397671 | 2397865 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 243 | 2216852 | 2217031 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 244 | 712614 | 712793 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 245 | 2694997 | 2695176 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 246 | 2309398 | 2309577 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 247 | 4039760 | 4039942 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 248 | 2645248 | 2645436 | + | NZ_LR134374.1 | Legionella spiritensis |
| 249 | 3773015 | 3773194 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 250 | 1988034 | 1988219 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 251 | 2390193 | 2390360 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 252 | 2240329 | 2240508 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 253 | 1722090 | 1722269 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 254 | 814993 | 815190 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 255 | 830185 | 830382 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 256 | 3670134 | 3670334 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 257 | 3080005 | 3080166 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 258 | 617658 | 617837 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 259 | 869273 | 869425 | - | NZ_CP060716.1 | Leucobacter denitrificans |
| 260 | 553456 | 553635 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 261 | 489224 | 489382 | + | NZ_CP031423.1 | Microbacterium lemovicicum |
| 262 | 2484749 | 2484928 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 263 | 3786525 | 3786704 | - | NZ_CP011937.1 | Bacillus velezensis |
| 264 | 279862 | 280041 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 265 | 143815 | 143994 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 266 | 144837 | 145016 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 267 | 143576 | 143755 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 268 | 143701 | 143880 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 269 | 113595 | 113774 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 270 | 1865648 | 1865827 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 271 | 143875 | 144054 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 272 | 499845 | 500000 | + | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 273 | 340756 | 340938 | + | NZ_LN879430.1 | Herbinix luporum |
| 274 | 3308526 | 3308708 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 275 | 1972433 | 1972612 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 276 | 145723 | 145905 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 277 | 2148677 | 2148859 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 278 | 2762862 | 2763026 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 279 | 368746 | 368901 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 280 | 150452 | 150634 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 281 | 1515096 | 1515275 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 282 | 716328 | 716507 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 283 | 754667 | 754846 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 284 | 2163785 | 2163964 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 285 | 2265257 | 2265436 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 286 | 656943 | 657122 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 287 | 1748359 | 1748541 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 288 | 652433 | 652615 | + | NZ_CP015515.1 | Rathayibacter tritici |
| 289 | 579798 | 579965 | + | NZ_CP038266.1 | Microbacterium wangchenii |
| 290 | 139123 | 139305 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 291 | 2420086 | 2420271 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 292 | 391398 | 391559 | + | NZ_CP013742.1 | Legionella pneumophila |
| 293 | 1777259 | 1777438 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 294 | 1264493 | 1264684 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 295 | 2643604 | 2643786 | + | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 296 | 2514867 | 2515058 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 297 | 1749 | 1937 | - | NZ_LR134417.1 | Legionella adelaidensis |
| 298 | 2546643 | 2546825 | - | NZ_CP047186.1 | Rathayibacter tanaceti |
| 299 | 2525576 | 2525758 | - | NZ_CP015449.1 | Dietzia lutea |
| 300 | 5986100 | 5986279 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 301 | 555323 | 555490 | + | NZ_CP044232.1 | Microbacterium lushaniae |
| 302 | 2194640 | 2194822 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 303 | 3411220 | 3411387 | - | NZ_CP013979.1 | Agromyces aureus |
| 304 | 1771625 | 1771804 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 305 | 2187416 | 2187598 | - | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 306 | 1178414 | 1178566 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 307 | 1209429 | 1209584 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 308 | 188691 | 188873 | + | NZ_CP018258.1 | Dehalogenimonas formicexedens |
| 309 | 165037 | 165225 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 310 | 578979 | 579131 | + | NZ_CP015622.1 | Corynebacterium crudilactis |
| 311 | 3090617 | 3090793 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 312 | 1201857 | 1202027 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 313 | 446191 | 446373 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 314 | 477830 | 478012 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 315 | 1029405 | 1029587 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 316 | 259206 | 259388 | - | NZ_LT996886.1 | Tessaracoccus timonensis |
| 317 | 3512060 | 3512242 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 318 | 501209 | 501394 | + | NZ_LT906467.1 | Corynebacterium imitans |
| 319 | 2850482 | 2850664 | - | NZ_CP033325.1 | Georgenia faecalis |
| 320 | 2422800 | 2422967 | - | NZ_CP028913.1 | Agromyces badenianii |
| 321 | 471010 | 471177 | - | NZ_CP038157.1 | Corynebacterium sanguinis |
| 322 | 402476 | 402628 | + | NZ_CP019688.1 | Corynebacterium glaucum |
| 323 | 983702 | 983878 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 324 | 527796 | 527981 | + | NZ_CP011542.1 | Corynebacterium mustelae |
| 325 | 4866926 | 4867111 | + | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 326 | 766462 | 766647 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 327 | 560913 | 561098 | + | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 328 | 450750 | 450902 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 329 | 323342 | 323509 | + | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 330 | 341114 | 341299 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 331 | 2069192 | 2069371 | - | NZ_LT906473.1 | Corynebacterium cystitidis |
| 332 | 387380 | 387565 | + | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 333 | 1926557 | 1926742 | + | NZ_LT906443.1 | Corynebacterium ulcerans |
| 334 | 831495 | 831680 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 335 | 385562 | 385747 | + | NZ_CP026948.1 | Corynebacterium liangguodongii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP059829.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00410.21 | 1.0 | 334 | 1549 | same-strand | Ribosomal protein S8 |
| 2 | PF00347.25 | 1.0 | 334 | 970 | same-strand | Ribosomal protein L6 |
| 3 | PF00861.24 | 1.0 | 334 | 539 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 4 | PF00333.22 | 1.0 | 334 | 14 | same-strand | Ribosomal protein S5, N-terminal domain |
| 5 | PF03719.17 | 1.0 | 334 | 14 | same-strand | Ribosomal protein S5, C-terminal domain |
| 6 | PF00828.21 | 1.0 | 334 | 26 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 7 | PF00344.22 | 0.87 | 291 | 474.0 | same-strand | SecY |
| 8 | PF00406.24 | 0.84 | 280 | 1835 | same-strand | Adenylate kinase |
| 9 | PF13207.8 | 0.84 | 280 | 1835 | same-strand | AAA domain |
| 10 | PF13671.8 | 0.69 | 229 | 1835 | same-strand | AAA domain |
| 11 | PF01176.21 | 0.62 | 207 | 2689.0 | same-strand | Translation initiation factor 1A / IF-1 |
| 12 | PF00253.23 | 0.66 | 220 | 1942 | same-strand | Ribosomal protein S14p/S29e |
++ More..