Result : Q04F46
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0346 protein OEOE_1017 |
| NCBI Accession ID | CP000411.1 |
| Organism | Oenococcus oeni (strain ATCC BAA-331 / PSU-1) |
| Left | 951069 |
| Right | 951299 |
| Strand | + |
| Nucleotide Sequence | ATGAGAAGTCGAGGTTTTTACGAGTGGTTAATGACACAGAGAAAACCAGAAAATGCGGATGAAGTTCAAGAATTTGCGAATGCAGCTTTTTTTGATTCGGAATTTCCTAAACAGTCACAGAATTTTGATGAAATCTCAAAATATTTGGAAGAAAATGCTCCCTATTTAATGAGCATGGAAGTATTCGACGAAGCTTGGCGGCGTTTTCTTGCTTCAGAGGAGGAATTATGA |
| Sequence | MRSRGFYEWLMTQRKPENADEVQEFANAAFFDSEFPKQSQNFDEISKYLEENAPYLMSMEVFDEAWRRFLASEEEL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11485. Profile Description: YozE SAM-like fold. hypothetical protein; Provisional |
| Pubmed ID | 17030793 |
| Domain | CDD:416295 |
| Functional Category | Others |
| Uniprot ID | Q04F46 |
| ORF Length (Amino Acid) | 76 |
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| Conservation Analysis |
No. of Species: 92
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 958879 | 959109 | + | NZ_CP014324.1 | Oenococcus oeni |
| 2 | 1537526 | 1537756 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 3 | 1064447 | 1064641 | + | NZ_CP027563.1 | Weissella confusa |
| 4 | 1272248 | 1272442 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 5 | 938092 | 938283 | + | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 6 | 798631 | 798825 | + | NZ_CP045530.1 | Limosilactobacillus pontis |
| 7 | 857501 | 857695 | + | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 8 | 551814 | 552008 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 9 | 674864 | 675058 | + | NZ_CP017326.1 | Weissella soli |
| 10 | 724361 | 724555 | + | NZ_CP061835.1 | Weissella viridescens |
| 11 | 1060553 | 1060750 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 12 | 917269 | 917463 | + | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 13 | 959061 | 959285 | - | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 14 | 670789 | 670980 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 15 | 840889 | 841083 | + | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 16 | 942068 | 942262 | + | NC_018631.1 | Leuconostoc gelidum JB7 |
| 17 | 960920 | 961111 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 18 | 732981 | 733172 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 19 | 819141 | 819335 | + | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 20 | 735710 | 735904 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 21 | 1136797 | 1136994 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 22 | 2019234 | 2019431 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 23 | 221517 | 221708 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 24 | 171041 | 171238 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 25 | 2727045 | 2727236 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 26 | 1275131 | 1275325 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 27 | 1926360 | 1926554 | - | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 28 | 2748481 | 2748675 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 29 | 1957595 | 1957789 | + | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 30 | 1125392 | 1125586 | - | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 31 | 1337532 | 1337726 | - | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 32 | 759455 | 759652 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 33 | 825189 | 825386 | - | NZ_CP019981.1 | Pediococcus inopinatus |
| 34 | 1889014 | 1889208 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 35 | 1449864 | 1450058 | - | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 36 | 676174 | 676368 | - | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 37 | 1531183 | 1531383 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 38 | 658072 | 658275 | - | NZ_CP031513.1 | Bombilactobacillus bombi |
| 39 | 1041884 | 1042078 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 40 | 927651 | 927845 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 41 | 1305517 | 1305741 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 42 | 671550 | 671744 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 43 | 753731 | 753925 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 44 | 1618981 | 1619172 | + | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 45 | 1123079 | 1123267 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 46 | 2435831 | 2436022 | - | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 47 | 1899775 | 1899963 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 48 | 3073106 | 3073318 | - | NZ_CP053989.1 | Niallia circulans |
| 49 | 2031922 | 2032113 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 50 | 3850704 | 3850895 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 51 | 2956420 | 2956620 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 52 | 1305191 | 1305385 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 53 | 1259891 | 1260088 | - | NZ_CP059829.1 | Lactobacillus ultunensis |
| 54 | 4434069 | 4434260 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 55 | 931360 | 931560 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 56 | 420984 | 421181 | + | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 57 | 1638311 | 1638523 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 58 | 980168 | 980371 | + | NZ_LR134483.1 | Listeria grayi |
| 59 | 2165421 | 2165609 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 60 | 1346829 | 1347044 | + | NC_014334.2 | Lacticaseibacillus paracasei |
| 61 | 2687291 | 2687494 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 62 | 1514981 | 1515175 | + | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 63 | 909476 | 909670 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 64 | 1906682 | 1906888 | - | NZ_LT906444.1 | Listeria welshimeri |
| 65 | 1987092 | 1987298 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 66 | 2247170 | 2247367 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 67 | 1933037 | 1933243 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 68 | 4986136 | 4986354 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 69 | 1160186 | 1160383 | - | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 70 | 1114368 | 1114562 | - | NZ_AP018549.1 | Lactobacillus paragasseri |
| 71 | 980067 | 980258 | + | NZ_CP024610.1 | Lactobacillus terrae |
| 72 | 1264805 | 1264993 | - | NC_012924.1 | Streptococcus suis SC84 |
| 73 | 937803 | 937994 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 74 | 950251 | 950448 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 75 | 727372 | 727569 | - | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 76 | 1061946 | 1062140 | - | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 77 | 1794307 | 1794522 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 78 | 2348354 | 2348551 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 79 | 960252 | 960449 | - | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 80 | 985164 | 985361 | + | NZ_CP049366.1 | Companilactobacillus pabuli |
| 81 | 1346503 | 1346700 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 82 | 776832 | 777029 | + | NZ_CP015444.1 | Lactobacillus helveticus |
| 83 | 281168 | 281362 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 84 | 468065 | 468262 | + | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 85 | 964598 | 964795 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 86 | 1445262 | 1445459 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 87 | 771172 | 771369 | + | NZ_CP029476.1 | Lactobacillus apis |
| 88 | 1205521 | 1205718 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 89 | 2163537 | 2163734 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 90 | 896820 | 897017 | + | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 91 | 650081 | 650272 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 92 | 2061058 | 2061249 | - | NZ_CP019323.1 | Companilactobacillus allii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029684.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02645.18 | 0.7 | 64 | 1633.0 | same-strand | Uncharacterised protein, DegV family COG1307 |
| 2 | PF13472.8 | 0.7 | 64 | 653 | same-strand | GDSL-like Lipase/Acylhydrolase family |
| 3 | PF00657.24 | 0.68 | 63 | 653.5 | same-strand | GDSL-like Lipase/Acylhydrolase |
| 4 | PF09911.11 | 0.68 | 63 | 40 | same-strand | Uncharacterized protein conserved in bacteria (DUF2140) |
| 5 | PF01351.20 | 0.68 | 63 | 888 | same-strand | Ribonuclease HII |
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