Result : Q04EG5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | CP000411.1 |
| Organism | Oenococcus oeni (strain ATCC BAA-331 / PSU-1) |
| Left | 1195209 |
| Right | 1195475 |
| Strand | + |
| Nucleotide Sequence | ATGCCAATTATTGAATCTTCAATTCAACGTGAACGCTTAAACAAAGCTGAGCGTGCCGTGCGCGCTCCACAAATCAGTGCATATCGTACTGCTGTTAAAAACTTTGAAAAAGCTGCTGCTGCTGGAGCTGACAATTTGCAAGAATTGTTCAGTAAAACCAGTGCAGCGATCGATAAAGCTGAAACGAAAAACTTGATCAAAAAGAATAAAGCTGCGCGCGATAAAGCCCGTCTTTATAAATTGCTCAAGGCAGCAACTAGTAAATGA |
| Sequence | MPIIESSIQRERLNKAERAVRAPQISAYRTAVKNFEKAAAAGADNLQELFSKTSAAIDKAETKNLIKKNKAARDKARLYKLLKAATSK |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 17030793 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q04EG5 |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 80
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1250344 | 1250610 | + | NZ_CP014324.1 | Oenococcus oeni |
| 2 | 121105 | 121371 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 3 | 885677 | 885931 | + | NZ_CP027563.1 | Weissella confusa |
| 4 | 1544415 | 1544666 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 5 | 1649163 | 1649414 | + | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 6 | 120219 | 120470 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 7 | 230340 | 230591 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 8 | 517045 | 517296 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 9 | 1520291 | 1520542 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 10 | 1311955 | 1312209 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 11 | 585387 | 585638 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 12 | 511935 | 512189 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 13 | 682481 | 682735 | + | NZ_CP061835.1 | Weissella viridescens |
| 14 | 2548709 | 2548963 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 15 | 839634 | 839888 | - | NZ_CP017326.1 | Weissella soli |
| 16 | 1160108 | 1160362 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 17 | 143921 | 144184 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 18 | 1582498 | 1582752 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 19 | 672534 | 672788 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 20 | 1422128 | 1422382 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 21 | 1447468 | 1447722 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 22 | 1802897 | 1803151 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 23 | 1324729 | 1324989 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 24 | 142177 | 142431 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 25 | 92791 | 93042 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 26 | 1261345 | 1261599 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 27 | 264755 | 265015 | - | NZ_CP039712.1 | Vagococcus zengguangii |
| 28 | 725174 | 725428 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 29 | 673411 | 673665 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 30 | 1938494 | 1938748 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 31 | 1557608 | 1557862 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 32 | 267966 | 268220 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 33 | 1280466 | 1280720 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 34 | 1277437 | 1277691 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 35 | 703032 | 703286 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 36 | 826296 | 826550 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 37 | 1153183 | 1153437 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 38 | 1607426 | 1607680 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 39 | 1581374 | 1581628 | + | NZ_CP065211.1 | Enterococcus lactis |
| 40 | 2254874 | 2255128 | + | NZ_CP023011.2 | Enterococcus hirae |
| 41 | 1625188 | 1625442 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 42 | 612021 | 612269 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 43 | 1596895 | 1597143 | + | NZ_CP014164.1 | Aerococcus viridans |
| 44 | 687389 | 687643 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 45 | 1998337 | 1998591 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 46 | 557661 | 557912 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 47 | 2160845 | 2161099 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 48 | 857682 | 857933 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 49 | 1277738 | 1277992 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 50 | 1228379 | 1228633 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 51 | 1270439 | 1270693 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 52 | 2578326 | 2578580 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 53 | 729806 | 730057 | - | NZ_CP029476.1 | Lactobacillus apis |
| 54 | 1465963 | 1466214 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 55 | 1259984 | 1260217 | + | NZ_LT906439.1 | Streptococcus merionis |
| 56 | 836372 | 836605 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 57 | 1128769 | 1129005 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 58 | 564197 | 564433 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 59 | 1077031 | 1077267 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 60 | 925402 | 925653 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 61 | 1055199 | 1055432 | + | NC_012924.1 | Streptococcus suis SC84 |
| 62 | 810566 | 810802 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 63 | 1405905 | 1406138 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 64 | 1812597 | 1812830 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 65 | 1827888 | 1828157 | + | NZ_CP034118.1 | Staphylospora marina |
| 66 | 1104514 | 1104747 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 67 | 858956 | 859192 | - | NZ_LS483343.1 | Streptococcus ferus |
| 68 | 997401 | 997637 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 69 | 1030805 | 1031041 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 70 | 1356082 | 1356315 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 71 | 916111 | 916347 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 72 | 1169939 | 1170190 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 73 | 894849 | 895085 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 74 | 910900 | 911133 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 75 | 1692928 | 1693161 | + | NZ_LR134293.1 | Streptococcus canis |
| 76 | 1167094 | 1167327 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 77 | 1654202 | 1654435 | + | NZ_CP070872.1 | Lactococcus taiwanensis |
| 78 | 1697017 | 1697253 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 79 | 1127323 | 1127577 | + | NZ_CP017194.1 | Lactococcus carnosus |
| 80 | 685487 | 685738 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP027563.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03772.18 | 0.64 | 51 | 1131 | opposite-strand | Competence protein |
| 2 | PF06144.15 | 0.65 | 52 | 95.5 | opposite-strand | DNA polymerase III, delta subunit |
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