Result : A6V0B2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein PSPA7_1111 |
| NCBI Accession ID | CP000744.1 |
| Organism | Pseudomonas aeruginosa (strain PA7) |
| Left | 1109775 |
| Right | 1110056 |
| Strand | + |
| Nucleotide Sequence | ATGACCGATACCCCTGACGTTCAACCCCCGAAAATCGAATTCCCCTGCGAGCGCTACCCGATCAAGGTGATCGGCGACGCCGGCGAAGGTTTCTCCGACCTGGTCGTGGAAATCATCCGGCGCCATGCGCCAGACCTCGACGCCGAGACCCTGGTGGTCCGCGACAGCAGCAAGGGGCGCTTCCTCTCGGTGCAGGTGCTGATCACCGCCACCGATGTCGACCAACTGCAAGCCATCCATAACGACCTGCGCGCGACCGGACGCGTGCACATGGTGCTCTGA |
| Sequence | MTDTPDVQPPKIEFPCERYPIKVIGDAGEGFSDLVVEIIRRHAPDLDAETLVVRDSSKGRFLSVQVLITATDVDQLQAIHNDLRATGRVHMVL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | A6V0B2 |
| ORF Length (Amino Acid) | 93 |
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| Conservation Analysis |
No. of Species: 72
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4478627 | 4478908 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 759578 | 759859 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 3 | 808129 | 808410 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 4 | 997543 | 997821 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 5 | 4466585 | 4466863 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 6 | 802053 | 802331 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 7 | 927905 | 928183 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 8 | 1181004 | 1181282 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 9 | 3625307 | 3625585 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 10 | 1316483 | 1316761 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 11 | 6330222 | 6330521 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 12 | 3752254 | 3752532 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 13 | 941269 | 941559 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 14 | 777020 | 777310 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 15 | 3706243 | 3706521 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 16 | 789395 | 789676 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 17 | 2333537 | 2333809 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 18 | 935895 | 936167 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 19 | 540925 | 541197 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 20 | 609040 | 609312 | + | NZ_CP015839.1 | Marinobacterium aestuarii |
| 21 | 1947839 | 1948120 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 22 | 3056651 | 3056923 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 23 | 464022 | 464303 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 24 | 5988206 | 5988481 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 25 | 943282 | 943551 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 26 | 1592084 | 1592356 | - | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 27 | 5458128 | 5458403 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 28 | 5876918 | 5877193 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 29 | 6009851 | 6010126 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 30 | 5152597 | 5152872 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 31 | 2727739 | 2728014 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 32 | 5226081 | 5226356 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 33 | 4722405 | 4722674 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 34 | 5041756 | 5042031 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 35 | 3413127 | 3413396 | - | NZ_CP036422.1 | Halioglobus maricola |
| 36 | 630230 | 630499 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 37 | 5916617 | 5916892 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 38 | 3971244 | 3971531 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 39 | 6036543 | 6036818 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 40 | 1618198 | 1618464 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 41 | 5135580 | 5135855 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 42 | 668036 | 668308 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 43 | 5216178 | 5216453 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 44 | 916691 | 916966 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 45 | 4264498 | 4264770 | - | NC_007912.1 | Saccharophagus degradans 2-40 |
| 46 | 1704864 | 1705175 | + | NZ_CP065135.1 | Halomonas venusta |
| 47 | 1079504 | 1079773 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 48 | 2818631 | 2818906 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 49 | 338325 | 338603 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 50 | 1763097 | 1763393 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 51 | 5512946 | 5513221 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 52 | 1622968 | 1623279 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 53 | 5677657 | 5677932 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 54 | 3326416 | 3326694 | + | NZ_CP059082.1 | Halomonas titanicae |
| 55 | 5762316 | 5762591 | + | NZ_CP009365.1 | Pseudomonas soli |
| 56 | 5239326 | 5239601 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 57 | 5893297 | 5893572 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 58 | 5527890 | 5528165 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 59 | 5730411 | 5730686 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 60 | 5747307 | 5747582 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 61 | 5370707 | 5370982 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 62 | 2434608 | 2434877 | - | NZ_CP017715.1 | Marinobacter salinus |
| 63 | 5072599 | 5072874 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 64 | 5124636 | 5124911 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 65 | 5076521 | 5076793 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 66 | 5746888 | 5747163 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 67 | 5155459 | 5155734 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 68 | 4254952 | 4255227 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 69 | 3384871 | 3385137 | - | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 70 | 5343632 | 5343910 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 71 | 1200296 | 1200571 | - | NC_017856.1 | Methylophaga frappieri |
| 72 | 787086 | 787358 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002516.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.9 | 65 | 650 | same-strand | Radical SAM superfamily |
| 2 | PF00768.22 | 1.0 | 72 | 83.0 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 3 | PF07943.15 | 1.0 | 72 | 83.0 | same-strand | Penicillin-binding protein 5, C-terminal domain |
| 4 | PF03330.20 | 0.99 | 71 | 1423 | same-strand | Lytic transglycolase |
| 5 | PF05036.15 | 0.93 | 67 | 1423 | same-strand | SPOR domain |
| 6 | PF13406.8 | 0.94 | 68 | 2447 | same-strand | Transglycosylase SLT domain |
| 7 | PF01098.21 | 0.97 | 70 | 3460.0 | same-strand | Cell cycle protein |
| 8 | PF00905.24 | 0.89 | 64 | 4595.5 | same-strand | Penicillin binding protein transpeptidase domain |
| 9 | PF03717.17 | 0.88 | 63 | 4595 | same-strand | Penicillin-binding Protein dimerisation domain |
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