Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein CA_C3711 |
NCBI Accession ID | AE001437.1 |
Organism | Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) |
Left | 3917627 |
Right | 3917899 |
Strand | - |
Nucleotide Sequence | ATGAGCGAACGCATTGATATAAGTATTGAGTTAAATGGGCAACAGTTGGATTTCTGTATTCCCACAGAAATAACGATGGGGCGTTTTACAGAACTCATGCATCAAGTGCTTAAGGGTGGAGTAATGCCCCAAAATTGGACGCTTAAATTGAAGGATAAAAACATAAAAGTTGATGATACTGATTTGATAAAAGAATTGCCAATAGGGAGTGGGGATGTTTTTTGCATTCTTCCCACACAAGAAAGGCAGGAGAATTTGAATGAAAATATCTAA |
Sequence | MSERIDISIELNGQQLDFCIPTEITMGRFTELMHQVLKGGVMPQNWTLKLKDKNIKVDDTDLIKELPIGSGDVFCILPTQERQENLNENI |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 8501044 11466286 |
Domain | |
Functional Category | Others |
Uniprot ID | Q04353 |
ORF Length (Amino Acid) | 90 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 3919209 | 3919481 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
2 | 1013372 | 1013644 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF13780.8 | 1.0 | 2 | 5601 | same-strand | Domain of unknown function (DUF4176) |
2 | PF01580.20 | 1.0 | 2 | 1112.0 | same-strand | FtsK/SpoIIIE family |
3 | PF10140.11 | 1.0 | 2 | -13.0 | same-strand | WXG100 protein secretion system (Wss), protein YukC |
4 | PF06013.14 | 1.0 | 2 | 511.5 | same-strand | Proteins of 100 residues with WXG |
5 | PF18879.2 | 1.0 | 2 | 511.5 | same-strand | EspA/EspE family |