Result : A0L5X5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | CP000471.1 |
| Organism | Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) |
| Left | 1057057 |
| Right | 1057356 |
| Strand | + |
| Nucleotide Sequence | ATGAACGATTTGAGAATGTACAACGTTCTGGTGCGCCCGCTGGTGACTGAAAAGTCCACCATGCAGTTGGAGAAGGGCAACCAAATCAGCTTTGCCGTCGCCACATGGGCCAATAAACCCCAGATTAAAAAAGCGATCGAGACCATCTATAGCGTCAAAGTAGAGGCGGTACAGGTGAGCAACGCCAAGGGTAAAACCAAGCGTTTTGGTAAGCTTGAAGGCAAGCGCAAGGATTGGAAGCGGGCCGTGGTTCGTCTCCAAGAGGGTCAATCCATCGACCTGTTCGATCAGGGCGCCTGA |
| Sequence | MNDLRMYNVLVRPLVTEKSTMQLEKGNQISFAVATWANKPQIKKAIETIYSVKVEAVQVSNAKGKTKRFGKLEGKRKDWKRAVVRLQEGQSIDLFDQGA |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | 19465526 |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A0L5X5 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 316
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1057057 | 1057356 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 2 | 1572991 | 1573299 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 3 | 3961798 | 3962106 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 4 | 3566938 | 3567246 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 5 | 6343534 | 6343830 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 6 | 4077608 | 4077916 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 7 | 428411 | 428719 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 8 | 617029 | 617331 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 9 | 2210251 | 2210559 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 10 | 3281401 | 3281694 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 11 | 788947 | 789240 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 12 | 4513490 | 4513798 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 13 | 1861428 | 1861685 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 14 | 4225420 | 4225671 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 15 | 1707976 | 1708269 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 16 | 3849007 | 3849306 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 17 | 639890 | 640168 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 18 | 1197666 | 1197959 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 19 | 1198776 | 1199069 | - | NC_004310.3 | Brucella suis 1330 |
| 20 | 1204564 | 1204857 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 21 | 1205091 | 1205384 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 22 | 788937 | 789230 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 23 | 1507712 | 1508005 | + | NZ_LT605585.1 | Brucella inopinata |
| 24 | 1933396 | 1933689 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 25 | 3827569 | 3827841 | - | NZ_CP016210.1 | Azoarcus olearius |
| 26 | 2210082 | 2210348 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 27 | 1483248 | 1483517 | - | NZ_AP017470.1 | Thermotomaculum hydrothermale |
| 28 | 1284248 | 1284541 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 29 | 1522653 | 1522946 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 30 | 4257363 | 4257656 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 31 | 1298759 | 1299052 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 32 | 1197997 | 1198290 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 33 | 1630041 | 1630334 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 34 | 69355 | 69648 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 35 | 1214034 | 1214327 | - | NC_007618.1 | Brucella abortus 2308 |
| 36 | 815406 | 815699 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 37 | 1927790 | 1928083 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 38 | 450114 | 450410 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 39 | 1084789 | 1085082 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 40 | 829693 | 829986 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 41 | 1605708 | 1606001 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 42 | 1537972 | 1538265 | - | NZ_CP053856.1 | Rhizobium pusense |
| 43 | 1482763 | 1483056 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 44 | 1164477 | 1164770 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 45 | 1452341 | 1452610 | - | NZ_CP012023.1 | Celeribacter marinus |
| 46 | 3264253 | 3264546 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 47 | 287771 | 288070 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 48 | 1102994 | 1103287 | + | NZ_CP034909.1 | Ensifer alkalisoli |
| 49 | 1147568 | 1147861 | + | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 50 | 1583399 | 1583692 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 51 | 5175520 | 5175816 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 52 | 231408 | 231701 | - | NZ_CP058235.1 | Bartonella alsatica |
| 53 | 1734493 | 1734786 | + | NZ_CP020906.1 | Rhizobium etli |
| 54 | 1738287 | 1738580 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 55 | 2632256 | 2632549 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 56 | 1782802 | 1783095 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 57 | 1783791 | 1784084 | + | NZ_CP071604.1 | Rhizobium binae |
| 58 | 3614808 | 3615101 | + | NZ_CP071454.1 | Rhizobium lentis |
| 59 | 1778789 | 1779082 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 60 | 1349224 | 1349517 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 61 | 785086 | 785379 | - | NZ_CP054021.1 | Rhizobium indicum |
| 62 | 2015734 | 2016027 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 63 | 1081887 | 1082165 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 64 | 451378 | 451677 | + | NZ_CP008849.1 | Alteromonas australica |
| 65 | 300370 | 300669 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 66 | 1501186 | 1501479 | + | NZ_CP013107.1 | Sinorhizobium americanum |
| 67 | 1140042 | 1140335 | - | NZ_HG965802.1 | Bartonella henselae |
| 68 | 1079941 | 1080246 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 69 | 2490633 | 2490920 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 70 | 1900591 | 1900869 | + | NZ_CP031555.1 | Thalassospira indica |
| 71 | 2870991 | 2871284 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 72 | 415100 | 415399 | + | NZ_CP014322.1 | Alteromonas addita |
| 73 | 3731335 | 3731634 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 74 | 1781290 | 1781583 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 75 | 2129582 | 2129878 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 76 | 2254415 | 2254708 | - | NZ_CP046415.1 | Guyparkeria halophila |
| 77 | 411334 | 411630 | + | NZ_CP025120.1 | Kangiella profundi |
| 78 | 465385 | 465681 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 79 | 3069564 | 3069833 | + | NZ_CP022196.1 | Celeribacter ethanolicus |
| 80 | 3837143 | 3837412 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 81 | 1322051 | 1322344 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 82 | 2120865 | 2121161 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 83 | 3707271 | 3707540 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 84 | 1304870 | 1305148 | + | NZ_CP024199.1 | Thalassospira marina |
| 85 | 617766 | 618059 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 86 | 1246238 | 1246534 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 87 | 3259971 | 3260225 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 88 | 4213759 | 4214052 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 89 | 2547693 | 2547986 | + | NZ_CP032509.1 | Georhizobium profundi |
| 90 | 2602153 | 2602407 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 91 | 158568 | 158837 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 92 | 59994 | 60290 | - | NZ_CP060244.1 | Entomobacter blattae |
| 93 | 2018594 | 2018893 | + | NZ_CP040882.1 | Sutterella faecalis |
| 94 | 2633897 | 2634190 | + | NZ_CP072611.1 | Aureimonas populi |
| 95 | 4308615 | 4308908 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 96 | 4145964 | 4146257 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 97 | 4743139 | 4743432 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 98 | 4784457 | 4784750 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 99 | 210913 | 211206 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 100 | 6047105 | 6047398 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 101 | 944614 | 944883 | + | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 102 | 1304850 | 1305128 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 103 | 1533123 | 1533416 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 104 | 1480342 | 1480635 | + | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 105 | 1663050 | 1663349 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 106 | 1229676 | 1229966 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 107 | 805796 | 806089 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 108 | 337411 | 337689 | - | NZ_CP046531.1 | Mannheimia ovis |
| 109 | 3196153 | 3196446 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 110 | 387718 | 388011 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 111 | 1433595 | 1433888 | - | NZ_CP064063.1 | Brucella anthropi |
| 112 | 2551236 | 2551514 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 113 | 1394036 | 1394308 | - | NZ_CP034464.1 | Undibacterium parvum |
| 114 | 185286 | 185564 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 115 | 365913 | 366191 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 116 | 1028522 | 1028815 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 117 | 1750376 | 1750669 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 118 | 124627 | 124869 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 119 | 5656123 | 5656422 | + | NZ_CP009365.1 | Pseudomonas soli |
| 120 | 5182809 | 5183108 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 121 | 517651 | 517950 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 122 | 609619 | 609918 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 123 | 688866 | 689165 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 124 | 5197660 | 5197959 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 125 | 2910830 | 2911129 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 126 | 577701 | 578000 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 127 | 921547 | 921825 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 128 | 1509065 | 1509319 | + | NZ_CP012946.1 | Blastochloris viridis |
| 129 | 5322809 | 5323108 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 130 | 510517 | 510816 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 131 | 723547 | 723840 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 132 | 2901043 | 2901336 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 133 | 2676835 | 2677128 | - | NZ_CP017715.1 | Marinobacter salinus |
| 134 | 4171812 | 4172111 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 135 | 5322345 | 5322644 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 136 | 801015 | 801314 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 137 | 5253202 | 5253501 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 138 | 5443792 | 5444091 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 139 | 5481731 | 5482030 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 140 | 5643753 | 5644052 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 141 | 5768284 | 5768583 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 142 | 6008853 | 6009152 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 143 | 5856226 | 5856525 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 144 | 5850402 | 5850701 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 145 | 5859902 | 5860201 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 146 | 6211405 | 6211704 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 147 | 4616518 | 4616817 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 148 | 6140314 | 6140613 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 149 | 6121878 | 6122177 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 150 | 6187617 | 6187916 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 151 | 436855 | 437154 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 152 | 6153950 | 6154249 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 153 | 624066 | 624365 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 154 | 5053622 | 5053921 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 155 | 1238925 | 1239224 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 156 | 4897872 | 4898171 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 157 | 6062389 | 6062688 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 158 | 5317920 | 5318219 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 159 | 2872922 | 2873221 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 160 | 5400995 | 5401294 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 161 | 693131 | 693430 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 162 | 6014782 | 6015081 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 163 | 535760 | 536038 | + | NZ_CP061280.1 | Mannheimia bovis |
| 164 | 728698 | 729000 | - | NC_015707.1 | Pseudothermotoga thermarum DSM 5069 |
| 165 | 1611256 | 1611525 | - | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 166 | 230762 | 231028 | + | NZ_CP061941.1 | Marinomonas algicola |
| 167 | 836853 | 837149 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 168 | 778019 | 778297 | - | NZ_CP029352.1 | Azospirillum thermophilum |
| 169 | 165289 | 165591 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 170 | 280772 | 281041 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 171 | 3861964 | 3862230 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 172 | 1880154 | 1880450 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 173 | 2808126 | 2808395 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 174 | 854006 | 854275 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 175 | 626364 | 626663 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 176 | 977932 | 978225 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 177 | 3792331 | 3792624 | - | NZ_CP020931.1 | Marinobacter salarius |
| 178 | 771258 | 771527 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 179 | 209346 | 209615 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 180 | 3846420 | 3846686 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 181 | 1532284 | 1532553 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 182 | 1085631 | 1085906 | + | NZ_CP028926.1 | Pasteurella multocida |
| 183 | 2011173 | 2011448 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 184 | 659869 | 660138 | + | NZ_CP004393.1 | Celeribacter indicus |
| 185 | 3681668 | 3681934 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 186 | 1457211 | 1457504 | - | NZ_CP054836.1 | Oricola thermophila |
| 187 | 1777352 | 1777618 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 188 | 4310691 | 4310957 | - | NZ_CP061081.1 | Marinomonas arctica |
| 189 | 4172529 | 4172798 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 190 | 2177093 | 2177362 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 191 | 289765 | 290061 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 192 | 2745935 | 2746228 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 193 | 128034 | 128303 | + | NZ_CP032125.1 | Profundibacter amoris |
| 194 | 164461 | 164742 | - | NZ_LN606600.1 | Acetobacter senegalensis |
| 195 | 1915092 | 1915346 | - | NZ_AP018907.1 | Blastochloris tepida |
| 196 | 397601 | 397879 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 197 | 3251652 | 3251942 | - | NZ_CP065915.1 | Pelagovum pacificum |
| 198 | 4039966 | 4040235 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 199 | 1377762 | 1378055 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 200 | 1287773 | 1288066 | + | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 201 | 4422193 | 4422489 | - | NZ_CP023465.1 | Lysobacter capsici |
| 202 | 377554 | 377832 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 203 | 376988 | 377269 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 204 | 1364360 | 1364656 | - | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 205 | 1217600 | 1217896 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 206 | 1029518 | 1029814 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 207 | 2447466 | 2447762 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 208 | 3317552 | 3317815 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 209 | 1801520 | 1801813 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 210 | 3145188 | 3145457 | - | NZ_CP010650.1 | Phaeobacter inhibens |
| 211 | 356056 | 356334 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 212 | 2099205 | 2099483 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 213 | 3310271 | 3310564 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 214 | 133724 | 133999 | - | NZ_LR134167.1 | Avibacterium volantium |
| 215 | 3007152 | 3007421 | - | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 216 | 45882 | 46136 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 217 | 2478925 | 2479203 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 218 | 1271300 | 1271599 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 219 | 1533936 | 1534229 | + | NZ_CP041238.1 | Ensifer mexicanus |
| 220 | 1267985 | 1268278 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 221 | 395073 | 395342 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 222 | 1443013 | 1443306 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 223 | 252996 | 253265 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 224 | 883375 | 883656 | + | NZ_CP042808.1 | Acetobacter oryzoeni |
| 225 | 2508558 | 2508839 | + | NC_021991.1 | Acetobacter pasteurianus 386B |
| 226 | 1013390 | 1013671 | + | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 227 | 297618 | 297887 | + | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 228 | 598256 | 598525 | + | NZ_CP048788.1 | Roseobacter ponti |
| 229 | 2929839 | 2930108 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 230 | 1666524 | 1666793 | - | NZ_CP025583.1 | Paracoccus jeotgali |
| 231 | 2411393 | 2411674 | - | NC_015186.1 | Acidiphilium multivorum AIU301 |
| 232 | 535779 | 536060 | + | NZ_CP015164.1 | Acetobacter ascendens |
| 233 | 4086841 | 4087095 | - | NZ_CP034588.1 | Silicimonas algicola |
| 234 | 1317771 | 1318040 | + | NZ_CP030918.1 | Paracoccus suum |
| 235 | 3530356 | 3530649 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 236 | 212713 | 212982 | - | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 237 | 3500253 | 3500522 | + | NZ_CP027407.1 | Roseobacter denitrificans |
| 238 | 3452067 | 3452336 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 239 | 3566701 | 3566952 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 240 | 2470553 | 2470855 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 241 | 1670737 | 1671003 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 242 | 249118 | 249414 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 243 | 919284 | 919538 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 244 | 3560170 | 3560487 | - | NC_016109.1 | Kitasatospora setae KM-6054 |
| 245 | 864506 | 864775 | - | NZ_CP015093.1 | Salipiger abyssi |
| 246 | 644975 | 645292 | + | NC_014006.1 | Sphingobium japonicum UT26S |
| 247 | 2977497 | 2977751 | - | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 248 | 274358 | 274627 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 249 | 111311 | 111565 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 250 | 1149394 | 1149675 | + | NZ_CP053708.1 | Lichenicola cladoniae |
| 251 | 315701 | 315979 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 252 | 234243 | 234509 | - | NZ_CP024920.1 | Qipengyuania seohaensis |
| 253 | 4354252 | 4354521 | - | NC_020911.1 | Octadecabacter antarcticus 307 |
| 254 | 1460280 | 1460591 | + | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 255 | 7038825 | 7039124 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 256 | 4477392 | 4477661 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 257 | 2310274 | 2310531 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 258 | 361694 | 361951 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 259 | 3081424 | 3081687 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 260 | 4314348 | 4314662 | - | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 261 | 92575 | 92844 | - | NZ_CP020083.1 | Blastomonas fulva |
| 262 | 2190992 | 2191261 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 263 | 2716867 | 2717142 | - | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 264 | 1518498 | 1518752 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 265 | 1276380 | 1276637 | + | NZ_LR134363.1 | Actinomyces slackii |
| 266 | 1659509 | 1659826 | - | NZ_CP060717.1 | Sphingomonas rhizophila |
| 267 | 1379389 | 1379658 | + | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 268 | 7502687 | 7502944 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 269 | 5377763 | 5378086 | + | NZ_CP027306.1 | Streptomyces atratus |
| 270 | 33270 | 33566 | + | NC_010645.1 | Bordetella avium 197N |
| 271 | 1264261 | 1264530 | + | NZ_CP017057.1 | Erythrobacter litoralis |
| 272 | 3930269 | 3930523 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 273 | 4986304 | 4986564 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 274 | 131238 | 131534 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 275 | 5889683 | 5889979 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 276 | 3375200 | 3375454 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 277 | 2938514 | 2938774 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 278 | 3332785 | 3333045 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 279 | 6468066 | 6468326 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 280 | 3966086 | 3966409 | - | NZ_CP023691.1 | Streptomyces platensis |
| 281 | 5306944 | 5307267 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 282 | 4650371 | 4650631 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 283 | 2968883 | 2969200 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 284 | 1125630 | 1125902 | - | NZ_CP022889.1 | Tsuneonella mangrovi |
| 285 | 410676 | 410936 | + | NZ_CP060789.1 | Tessaracoccus defluvii |
| 286 | 821560 | 821898 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 287 | 5754079 | 5754375 | - | NZ_CP016172.1 | Bordetella flabilis |
| 288 | 32528 | 32824 | + | NZ_CP043146.1 | Bordetella holmesii |
| 289 | 3500636 | 3500896 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 290 | 4957820 | 4958080 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 291 | 3056826 | 3057131 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 292 | 2977189 | 2977458 | - | NZ_CP016033.1 | Erythrobacter neustonensis |
| 293 | 4428278 | 4428574 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 294 | 1567448 | 1567744 | - | NZ_CP021395.1 | Bordetella hinzii |
| 295 | 1494812 | 1495120 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 296 | 4849289 | 4849549 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 297 | 3873688 | 3873948 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 298 | 3874523 | 3874783 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 299 | 4874520 | 4874780 | + | NZ_CP070242.1 | Streptomyces californicus |
| 300 | 4934323 | 4934583 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 301 | 5210327 | 5210623 | - | NC_010170.1 | Bordetella petrii |
| 302 | 1693289 | 1693543 | + | NC_022795.1 | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 |
| 303 | 2582964 | 2583263 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 304 | 3069356 | 3069661 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 305 | 1892661 | 1892918 | - | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 306 | 3260154 | 3260423 | + | NZ_CP019948.1 | Methylocystis bryophila |
| 307 | 3007226 | 3007495 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 308 | 384185 | 384436 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 309 | 1621763 | 1622017 | - | NZ_LR134357.1 | Actinomyces israelii |
| 310 | 3052549 | 3052872 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 311 | 2427366 | 2427662 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 312 | 3592528 | 3592797 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 313 | 1316305 | 1316577 | + | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 314 | 1760007 | 1760306 | - | NZ_CP044548.2 | Janibacter melonis |
| 315 | 2867658 | 2867960 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 316 | 1661897 | 1662157 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 317 | 3299474 | 3299779 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008576.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00009.29 | 0.82 | 258 | 2424 | same-strand | Elongation factor Tu GTP binding domain |
| 2 | PF03764.20 | 0.72 | 226 | 3057.5 | same-strand | Elongation factor G, domain IV |
| 3 | PF00679.26 | 0.72 | 226 | 3057.5 | same-strand | Elongation factor G C-terminus |
| 4 | PF14492.8 | 0.72 | 226 | 3057.5 | same-strand | Elongation Factor G, domain III |
| 5 | PF03144.27 | 0.82 | 258 | 2433.0 | same-strand | Elongation factor Tu domain 2 |
| 6 | PF03143.19 | 0.82 | 258 | 1822.5 | same-strand | Elongation factor Tu C-terminal domain |
| 7 | PF01926.25 | 0.8 | 254 | 1835 | same-strand | 50S ribosome-binding GTPase |
| 8 | PF00338.24 | 1.0 | 316 | 1380.5 | same-strand | Ribosomal protein S10p/S20e |
| 9 | PF00573.24 | 1.0 | 316 | -3.0 | same-strand | Ribosomal protein L4/L1 family |
| 10 | PF03947.20 | 0.98 | 310 | 17.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 11 | PF00181.25 | 0.98 | 310 | 17.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 12 | PF00203.23 | 0.98 | 310 | 864.0 | same-strand | Ribosomal protein S19 |
| 13 | PF00237.21 | 0.97 | 306 | 1148.0 | same-strand | Ribosomal protein L22p/L17e |
| 14 | PF00189.22 | 0.96 | 303 | 1534 | same-strand | Ribosomal protein S3, C-terminal domain |
| 15 | PF07650.19 | 0.96 | 303 | 1534 | same-strand | KH domain |
| 16 | PF00252.20 | 0.91 | 289 | 2259 | same-strand | Ribosomal protein L16p/L10e |
++ More..