Result : Q03UT3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CP000414.1 |
| Organism | Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / DSM 20343 / BCRC 11652 / CCM 1803 / JCM 6124 / NCDO 523 / NBRC 100496 / NCIMB 8023 / NCTC 12954 / NRRL B-1118 / 37Y) |
| Left | 1942920 |
| Right | 1943204 |
| Strand | - |
| Nucleotide Sequence | ATGTCAGAACAAAACTCACGTCCACAAAATTCAGAACGTCCACAACGTTCACGTCGCCCACAAGGCGGTCCACGTCGTCGTCGTAAGGTTGATTTTATCGCTGCTAACCACATCGAATATATTGACTATAAGAACACTGAATTATTAGAACGTTTCATCTCAGAACGTGGTAAGATTTTACCACGTCGTGTGACTGGTACTTCTGCAAAAAACCAACGCAAGGTAACTACTGCTATCAAGCGTGCACGTATCATGGCTTTGTTGCCATTCGTTACGGAAGATTAA |
| Sequence | MSEQNSRPQNSERPQRSRRPQGGPRRRRKVDFIAANHIEYIDYKNTELLERFISERGKILPRRVTGTSAKNQRKVTTAIKRARIMALLPFVTED |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 17030793 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q03UT3 |
| ORF Length (Amino Acid) | 94 |
++ More..
| Conservation Analysis |
No. of Species: 139
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1796546 | 1796830 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 2 | 1925144 | 1925428 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 3 | 102072 | 102356 | + | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 4 | 1540984 | 1541268 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 5 | 850469 | 850753 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 6 | 1108641 | 1108925 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 7 | 292960 | 293244 | + | NC_018631.1 | Leuconostoc gelidum JB7 |
| 8 | 1730617 | 1730856 | - | NC_012924.1 | Streptococcus suis SC84 |
| 9 | 1576520 | 1576759 | - | NZ_LS483343.1 | Streptococcus ferus |
| 10 | 884978 | 885217 | + | NZ_LR134293.1 | Streptococcus canis |
| 11 | 1940542 | 1940781 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 12 | 927197 | 927439 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 13 | 1959455 | 1959694 | + | NZ_CP014835.1 | Streptococcus halotolerans |
| 14 | 124103 | 124348 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 15 | 10147 | 10389 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 16 | 1997797 | 1998042 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 17 | 2328836 | 2329081 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 18 | 735459 | 735704 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 19 | 417371 | 417616 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 20 | 1775719 | 1775964 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 21 | 360785 | 361030 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 22 | 12725 | 13045 | + | NZ_CP014324.1 | Oenococcus oeni |
| 23 | 3247148 | 3247426 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 24 | 2256169 | 2256450 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 25 | 692582 | 692902 | - | NZ_CP029684.2 | Oenococcus sicerae |
| 26 | 3292272 | 3292502 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 27 | 774935 | 775213 | - | NZ_CP034437.1 | Paenibacillus albus |
| 28 | 1560055 | 1560339 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 29 | 164936 | 165214 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 30 | 3642335 | 3642613 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 31 | 5348118 | 5348399 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 32 | 6796130 | 6796402 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 33 | 7044098 | 7044370 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 34 | 1895357 | 1895629 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 35 | 7149888 | 7150160 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 36 | 1853593 | 1853865 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 37 | 7902829 | 7903101 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 38 | 8083903 | 8084196 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 39 | 8140227 | 8140499 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 40 | 961683 | 961955 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 41 | 440017 | 440325 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 42 | 1374186 | 1374425 | - | NC_022538.1 | Acholeplasma palmae J233 |
| 43 | 4227449 | 4227766 | - | NZ_CP033433.1 | Cohnella candidum |
| 44 | 1449658 | 1449921 | - | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 45 | 883183 | 883449 | + | NC_014225.1 | Waddlia chondrophila WSU 86-1044 |
| 46 | 4252356 | 4252658 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 47 | 4314046 | 4314282 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 48 | 2001509 | 2001760 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 49 | 2381131 | 2381400 | - | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 50 | 3764752 | 3765009 | + | NZ_CP030775.1 | Clostridium butyricum |
| 51 | 5092389 | 5092646 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 52 | 5924001 | 5924261 | - | NZ_CP043998.1 | Clostridium diolis |
| 53 | 969413 | 969706 | + | NC_017583.1 | Spirochaeta thermophila DSM 6578 |
| 54 | 6514802 | 6515062 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 55 | 1915942 | 1916175 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 56 | 2724184 | 2724423 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 57 | 1234332 | 1234586 | - | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 58 | 2247405 | 2247662 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 59 | 4615027 | 4615284 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 60 | 1711118 | 1711351 | - | NZ_CP023671.1 | Clostridium septicum |
| 61 | 2805029 | 2805283 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 62 | 3880232 | 3880486 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 63 | 820635 | 820922 | - | NC_015436.1 | Sphaerochaeta coccoides DSM 17374 |
| 64 | 878212 | 878535 | - | NZ_CP042829.1 | Tepidiforma bonchosmolovskayae |
| 65 | 5447816 | 5448073 | - | NZ_CP020953.1 | Clostridium drakei |
| 66 | 4596241 | 4596498 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 67 | 4473520 | 4473777 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 68 | 18266 | 18556 | + | NZ_CP009498.1 | Endomicrobium proavitum |
| 69 | 3056858 | 3057115 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 70 | 1440231 | 1440461 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 71 | 1623232 | 1623498 | + | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 72 | 328086 | 328334 | - | NC_017096.1 | Caldisericum exile AZM16c01 |
| 73 | 686400 | 686639 | - | NC_010503.1 | Ureaplasma parvum serovar 3 str. ATCC 27815 |
| 74 | 769779 | 770018 | - | NC_011374.1 | Ureaplasma urealyticum serovar 10 str. ATCC 33699 |
| 75 | 244808 | 245083 | - | NZ_CP034841.1 | Mycoplasmopsis phocirhinis |
| 76 | 4744927 | 4745184 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 77 | 97073 | 97339 | + | NZ_CP029494.1 | Deinococcus irradiatisoli |
| 78 | 1412157 | 1412429 | - | NZ_CP040882.1 | Sutterella faecalis |
| 79 | 2500838 | 2501110 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 80 | 908646 | 908879 | - | NZ_LS483459.1 | Corynebacterium jeikeium |
| 81 | 945769 | 945999 | + | NZ_CP042808.1 | Acetobacter oryzoeni |
| 82 | 2570953 | 2571183 | + | NC_021991.1 | Acetobacter pasteurianus 386B |
| 83 | 599462 | 599692 | + | NZ_CP015164.1 | Acetobacter ascendens |
| 84 | 1075767 | 1075997 | + | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 85 | 128519 | 128791 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 86 | 830134 | 830406 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 87 | 2860392 | 2860673 | + | NZ_CP061799.1 | Desulfonema limicola |
| 88 | 90184 | 90447 | - | NZ_LN606600.1 | Acetobacter senegalensis |
| 89 | 2091572 | 2091832 | + | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 90 | 1415786 | 1416055 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 91 | 1996775 | 1997044 | + | NZ_CP054619.1 | Azospirillum oryzae |
| 92 | 2469539 | 2469808 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 93 | 2700577 | 2700852 | - | NZ_CP060244.1 | Entomobacter blattae |
| 94 | 2219790 | 2220065 | - | NC_007510.1 | Burkholderia lata |
| 95 | 2155205 | 2155480 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 96 | 2145258 | 2145533 | - | NZ_CP013401.1 | Burkholderia metallica |
| 97 | 2703451 | 2703717 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 98 | 1693628 | 1693894 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 99 | 2125651 | 2125926 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 100 | 2077842 | 2078117 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 101 | 2152128 | 2152403 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 102 | 2333282 | 2333557 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 103 | 2341991 | 2342224 | - | NZ_LT906481.1 | Corynebacterium urealyticum |
| 104 | 6817586 | 6817825 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 105 | 532463 | 532735 | - | NZ_CP011387.1 | Deinococcus puniceus |
| 106 | 3403972 | 3404247 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 107 | 2407708 | 2407983 | - | NZ_CP009727.1 | Burkholderia mallei |
| 108 | 3454516 | 3454791 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 109 | 1992004 | 1992252 | + | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 110 | 2230117 | 2230392 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 111 | 3525071 | 3525346 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 112 | 1349507 | 1349782 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 113 | 794333 | 794608 | - | NZ_CP035900.1 | Burkholderia glumae |
| 114 | 2654877 | 2655152 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 115 | 1647842 | 1648090 | + | NZ_CP046883.1 | Corynebacterium anserum |
| 116 | 1370965 | 1371240 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 117 | 2253921 | 2254202 | + | NZ_CP047045.1 | Terricaulis silvestris |
| 118 | 2081847 | 2082122 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 119 | 3761988 | 3762251 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 120 | 3919644 | 3919919 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 121 | 3136068 | 3136316 | - | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 122 | 1686159 | 1686437 | + | NZ_AP023213.1 | Citrifermentans bremense |
| 123 | 3192050 | 3192328 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 124 | 1769873 | 1770148 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 125 | 547476 | 547724 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 126 | 1703266 | 1703541 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 127 | 1055731 | 1055979 | - | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 128 | 1924812 | 1925060 | + | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 129 | 2861580 | 2861828 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 130 | 1738776 | 1739051 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 131 | 1233108 | 1233407 | - | NC_011959.1 | Thermomicrobium roseum DSM 5159 |
| 132 | 1943535 | 1943789 | + | NZ_CP009249.1 | Corynebacterium phocae |
| 133 | 831191 | 831439 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 134 | 700628 | 700876 | - | NZ_CP008944.1 | Corynebacterium atypicum |
| 135 | 5084171 | 5084404 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 136 | 2031451 | 2031705 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 137 | 1921565 | 1921852 | - | NZ_AP018437.1 | Pelolinea submarina |
| 138 | 5313642 | 5313875 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 139 | 6532770 | 6533006 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP028251.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 0.87 | 121 | 486 | same-strand | Ribosomal protein S6 |
++ More..