* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483405.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF12836.9
|
0.75
|
3
|
2235
|
same-strand
|
Helix-hairpin-helix motif
|
2
|
PF00633.25
|
0.75
|
3
|
2235
|
same-strand
|
Helix-hairpin-helix motif
|
3
|
PF13180.8
|
1.0
|
4
|
1044.0
|
same-strand
|
PDZ domain
|
4
|
PF17820.3
|
0.75
|
3
|
1043
|
same-strand
|
PDZ domain
|
5
|
PF01467.28
|
1.0
|
4
|
557.0
|
same-strand
|
Cytidylyltransferase-like
|
6
|
PF03602.17
|
1.0
|
4
|
-3.0
|
same-strand
|
Conserved hypothetical protein 95
|
7
|
PF01098.21
|
1.0
|
4
|
26.5
|
same-strand
|
Cell cycle protein
|
8
|
PF00009.29
|
1.0
|
4
|
1334.5
|
same-strand
|
Elongation factor Tu GTP binding domain
|
9
|
PF00679.26
|
1.0
|
4
|
1334.5
|
same-strand
|
Elongation factor G C-terminus
|
10
|
PF03144.27
|
1.0
|
4
|
1334.5
|
same-strand
|
Elongation factor Tu domain 2
|
11
|
PF01926.25
|
1.0
|
4
|
1334.5
|
same-strand
|
50S ribosome-binding GTPase
|
12
|
PF00459.27
|
0.75
|
3
|
3312
|
same-strand
|
Inositol monophosphatase family
|
13
|
PF05256.14
|
0.75
|
3
|
4110
|
same-strand
|
Uncharacterised protein family (UPF0223)
|
++ More..