Result : Q03GB1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L35 |
| NCBI Accession ID | CP000422.1 |
| Organism | Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w) |
| Left | 742151 |
| Right | 742348 |
| Strand | + |
| Nucleotide Sequence | ATGCCTAAAATGAAGACAAACCGCGCTGCTGCTAAGCGTTTTAAGAAAACTGCTAATGGCGGTCTTAAGAGTGCAAATGCTTATACAAGTCACCGTTTCCATGGAAAGACTAAGAAGCAACGTCGTCAATTACGTGGTACAGACATGATGGACAGTACTAACGTAAAGCGTTACAAGAAGTTACTTTCAAACATCTAG |
| Sequence | MPKMKTNRAAAKRFKKTANGGLKSANAYTSHRFHGKTKKQRRQLRGTDMMDSTNVKRYKKLLSNI |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00392. Profile Description: Ribosomal protein L35. This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 17030793 |
| Domain | CDD:412354 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q03GB1 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 357
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 742151 | 742348 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 2 | 817275 | 817475 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 3 | 1126179 | 1126382 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 4 | 779678 | 779872 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 5 | 1536915 | 1537112 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 6 | 1124976 | 1125173 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 7 | 1280567 | 1280764 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 8 | 394222 | 394419 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 9 | 1763934 | 1764128 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 10 | 919491 | 919688 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 11 | 2292349 | 2292546 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 12 | 269648 | 269845 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 13 | 1386043 | 1386240 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 14 | 1483770 | 1483967 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 15 | 2176617 | 2176814 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 16 | 1821708 | 1821911 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 17 | 1817507 | 1817701 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 18 | 1142612 | 1142809 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 19 | 116781 | 116978 | - | NZ_CP029684.2 | Oenococcus sicerae |
| 20 | 1154008 | 1154208 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 21 | 1213840 | 1214037 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 22 | 1325476 | 1325673 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 23 | 663992 | 664195 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 24 | 2279472 | 2279669 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 25 | 1246041 | 1246238 | - | NZ_CP014324.1 | Oenococcus oeni |
| 26 | 2196705 | 2196899 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 27 | 1191381 | 1191575 | - | NZ_CP023501.1 | Weissella paramesenteroides |
| 28 | 1014824 | 1015018 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 29 | 38669 | 38866 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 30 | 13158 | 13352 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 31 | 563657 | 563851 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 32 | 1687171 | 1687365 | - | NZ_CP027563.1 | Weissella confusa |
| 33 | 542356 | 542550 | + | NZ_CP014332.1 | Weissella jogaejeotgali |
| 34 | 614304 | 614498 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 35 | 1315036 | 1315230 | - | NZ_CP061835.1 | Weissella viridescens |
| 36 | 2978930 | 2979127 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 37 | 1198753 | 1198950 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 38 | 1283145 | 1283342 | - | NZ_CP017326.1 | Weissella soli |
| 39 | 793992 | 794180 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 40 | 994509 | 994703 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 41 | 1596835 | 1597029 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 42 | 544465 | 544665 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 43 | 1562665 | 1562865 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 44 | 582726 | 582926 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 45 | 783906 | 784106 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 46 | 1147181 | 1147375 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 47 | 965901 | 966101 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 48 | 233697 | 233897 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 49 | 1225634 | 1225831 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 50 | 716446 | 716643 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 51 | 1452027 | 1452227 | - | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 52 | 1402559 | 1402759 | - | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 53 | 1445243 | 1445443 | - | NZ_AP018549.1 | Lactobacillus paragasseri |
| 54 | 1265078 | 1265278 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 55 | 444745 | 444945 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 56 | 1648300 | 1648500 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 57 | 1628416 | 1628616 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 58 | 1689802 | 1689999 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 59 | 1588036 | 1588233 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 60 | 551914 | 552114 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 61 | 595936 | 596136 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 62 | 673310 | 673510 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 63 | 1630270 | 1630470 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 64 | 803734 | 803931 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 65 | 1287943 | 1288143 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 66 | 1047425 | 1047622 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 67 | 1528728 | 1528928 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 68 | 1247641 | 1247835 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 69 | 1758947 | 1759147 | + | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 70 | 1425236 | 1425433 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 71 | 949812 | 950009 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 72 | 552003 | 552203 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 73 | 196642 | 196842 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 74 | 1342609 | 1342809 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 75 | 1316056 | 1316256 | - | NZ_CP018809.1 | Lactobacillus jensenii |
| 76 | 580830 | 581030 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 77 | 1206260 | 1206460 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 78 | 1292790 | 1292990 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 79 | 2264392 | 2264592 | + | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 80 | 1489032 | 1489232 | + | NZ_CP043405.1 | Streptococcus ratti |
| 81 | 1440749 | 1440949 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 82 | 1038354 | 1038554 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 83 | 956138 | 956338 | - | NZ_CP013237.1 | Streptococcus mutans |
| 84 | 710473 | 710673 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 85 | 1400243 | 1400443 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 86 | 1378138 | 1378338 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 87 | 1062679 | 1062879 | + | NZ_LR594049.1 | Streptococcus gordonii |
| 88 | 761629 | 761829 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 89 | 1133790 | 1133990 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 90 | 639377 | 639577 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 91 | 1109905 | 1110105 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 92 | 1378986 | 1379186 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 93 | 1640938 | 1641138 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 94 | 1075390 | 1075590 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 95 | 1316182 | 1316382 | - | NZ_CP039457.1 | Streptococcus pasteurianus |
| 96 | 2220081 | 2220281 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 97 | 1196589 | 1196789 | - | NZ_LS483343.1 | Streptococcus ferus |
| 98 | 1568639 | 1568839 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 99 | 359407 | 359607 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 100 | 1787249 | 1787449 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 101 | 739924 | 740124 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 102 | 715101 | 715301 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 103 | 1090568 | 1090768 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 104 | 1272112 | 1272312 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 105 | 1211962 | 1212162 | - | NC_012924.1 | Streptococcus suis SC84 |
| 106 | 1507979 | 1508179 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 107 | 1330079 | 1330279 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 108 | 830255 | 830455 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 109 | 891543 | 891743 | - | NZ_LT906439.1 | Streptococcus merionis |
| 110 | 1123502 | 1123702 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 111 | 2055808 | 2056008 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 112 | 1053810 | 1054010 | - | NZ_CP029476.1 | Lactobacillus apis |
| 113 | 881137 | 881337 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 114 | 1546688 | 1546888 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 115 | 1983756 | 1983956 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 116 | 612959 | 613159 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 117 | 228302 | 228502 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 118 | 257041 | 257241 | + | NZ_CP065211.1 | Enterococcus lactis |
| 119 | 402309 | 402509 | - | NZ_CP023011.2 | Enterococcus hirae |
| 120 | 752229 | 752429 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 121 | 1762715 | 1762915 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 122 | 613881 | 614078 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 123 | 1838424 | 1838621 | - | NZ_LR134293.1 | Streptococcus canis |
| 124 | 826415 | 826612 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 125 | 361506 | 361706 | + | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 126 | 722230 | 722430 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 127 | 286757 | 286957 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 128 | 1138251 | 1138448 | + | NZ_CP053988.1 | Abiotrophia defectiva |
| 129 | 3318783 | 3318983 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 130 | 1114864 | 1115061 | - | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 131 | 1763017 | 1763217 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 132 | 206649 | 206849 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 133 | 1366581 | 1366781 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 134 | 1439121 | 1439321 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 135 | 1605077 | 1605277 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 136 | 389866 | 390069 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 137 | 271608 | 271808 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 138 | 225821 | 226021 | + | NZ_CP012047.1 | Tetragenococcus halophilus |
| 139 | 2674069 | 2674269 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 140 | 533277 | 533477 | + | NZ_CP017267.1 | Vagococcus teuberi |
| 141 | 296180 | 296377 | - | NZ_CP014159.1 | Aerococcus christensenii |
| 142 | 2190005 | 2190205 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 143 | 2924606 | 2924806 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 144 | 1180321 | 1180521 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 145 | 550432 | 550632 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 146 | 241409 | 241612 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 147 | 657822 | 658022 | + | NZ_CP014164.1 | Aerococcus viridans |
| 148 | 184152 | 184346 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 149 | 1493736 | 1493930 | - | NZ_CP011391.1 | Faecalibaculum rodentium |
| 150 | 2757799 | 2757999 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 151 | 2765564 | 2765764 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 152 | 2831392 | 2831592 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 153 | 3342077 | 3342277 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 154 | 2952615 | 2952815 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 155 | 2737777 | 2737977 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 156 | 1956196 | 1956396 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 157 | 3185163 | 3185363 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 158 | 583560 | 583760 | + | NZ_CP014161.1 | Aerococcus urinae |
| 159 | 1528025 | 1528225 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 160 | 1212643 | 1212843 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 161 | 3659251 | 3659451 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 162 | 4508023 | 4508223 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 163 | 988877 | 989074 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 164 | 2837177 | 2837377 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 165 | 2769604 | 2769804 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 166 | 2919328 | 2919528 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 167 | 3105155 | 3105355 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 168 | 3984371 | 3984571 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 169 | 53638 | 53838 | - | NZ_CP015439.1 | Anoxybacillus amylolyticus |
| 170 | 2473329 | 2473529 | - | NZ_CP012024.1 | Bacillus smithii |
| 171 | 1025434 | 1025634 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 172 | 4140448 | 4140648 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 173 | 2370959 | 2371159 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 174 | 1196275 | 1196475 | + | NZ_CP011937.1 | Bacillus velezensis |
| 175 | 2791407 | 2791607 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 176 | 3294771 | 3294971 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 177 | 3764010 | 3764210 | - | NZ_CP053989.1 | Niallia circulans |
| 178 | 2573105 | 2573305 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 179 | 1483435 | 1483635 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 180 | 3337743 | 3337943 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 181 | 132781 | 132981 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 182 | 3696342 | 3696542 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 183 | 2278397 | 2278594 | - | NZ_LN879430.1 | Herbinix luporum |
| 184 | 2201135 | 2201335 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 185 | 775796 | 775993 | - | NZ_CP070062.1 | Coprococcus comes |
| 186 | 1747327 | 1747527 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 187 | 1682852 | 1683052 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 188 | 694490 | 694684 | + | NZ_CP023434.1 | Suicoccus acidiformans |
| 189 | 1286260 | 1286460 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 190 | 1269668 | 1269868 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 191 | 616731 | 616925 | - | NZ_CP024965.1 | Entomoplasma somnilux |
| 192 | 1237723 | 1237923 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 193 | 1057620 | 1057820 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 194 | 2819366 | 2819566 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 195 | 2730616 | 2730816 | + | NZ_CP043404.1 | Bacillus safensis |
| 196 | 2229782 | 2229979 | - | NZ_CP041666.1 | Radiobacillus deserti |
| 197 | 1591668 | 1591865 | - | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 198 | 1159679 | 1159879 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 199 | 269302 | 269502 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 200 | 1209717 | 1209917 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 201 | 1352742 | 1352942 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 202 | 1741538 | 1741738 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 203 | 3629665 | 3629865 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 204 | 3138667 | 3138867 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 205 | 2118852 | 2119052 | - | NZ_CP027770.1 | Staphylococcus felis |
| 206 | 825181 | 825378 | + | NZ_CP034118.1 | Staphylospora marina |
| 207 | 1488982 | 1489179 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 208 | 1445060 | 1445260 | + | NZ_LS483476.1 | Lederbergia lentus |
| 209 | 2922538 | 2922738 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 210 | 1631211 | 1631408 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 211 | 250290 | 250487 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 212 | 387970 | 388170 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 213 | 1369947 | 1370147 | + | NZ_CP014163.1 | Aerococcus urinaehominis |
| 214 | 1240627 | 1240827 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 215 | 1550041 | 1550241 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 216 | 1791016 | 1791213 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 217 | 3253410 | 3253610 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 218 | 999065 | 999265 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 219 | 1195939 | 1196139 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 220 | 1253171 | 1253371 | + | NZ_AP018587.1 | Staphylococcus caprae |
| 221 | 4792675 | 4792872 | - | NZ_CP039126.1 | Blautia producta |
| 222 | 2488543 | 2488740 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 223 | 3579416 | 3579616 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 224 | 3211173 | 3211370 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 225 | 2139743 | 2139943 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 226 | 1672675 | 1672875 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 227 | 908322 | 908516 | - | NZ_CP024963.1 | Entomoplasma luminosum |
| 228 | 2521505 | 2521702 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 229 | 1604958 | 1605155 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 230 | 2327876 | 2328076 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 231 | 2334840 | 2335040 | - | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 232 | 1319509 | 1319709 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 233 | 1163471 | 1163671 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 234 | 2831948 | 2832148 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 235 | 3718865 | 3719062 | + | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 236 | 2182436 | 2182630 | - | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 237 | 13951 | 14148 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 238 | 922479 | 922676 | + | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 239 | 810119 | 810316 | + | NZ_CP030280.1 | Blautia argi |
| 240 | 304495 | 304689 | + | NZ_CP024962.1 | Entomoplasma freundtii |
| 241 | 1085578 | 1085772 | + | NZ_CP046314.1 | Gemella morbillorum |
| 242 | 1908571 | 1908771 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 243 | 3431004 | 3431204 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 244 | 1310439 | 1310639 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 245 | 3793895 | 3794092 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 246 | 130167 | 130367 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 247 | 1190209 | 1190409 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 248 | 2345227 | 2345424 | + | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 249 | 1664628 | 1664825 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 250 | 2731779 | 2731973 | + | NZ_CP022315.1 | Virgibacillus phasianinus |
| 251 | 1506054 | 1506251 | - | NZ_AP014879.1 | Sulfuricaulis limicola |
| 252 | 600742 | 600939 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 253 | 1766793 | 1766990 | - | NZ_LR699011.1 | Roseburia hominis |
| 254 | 609575 | 609775 | - | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 255 | 2509242 | 2509439 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 256 | 1119185 | 1119382 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 257 | 1049524 | 1049724 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 258 | 2321628 | 2321825 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 259 | 1522152 | 1522349 | + | NZ_CP040463.1 | Caminibacter mediatlanticus TB-2 |
| 260 | 1801998 | 1802195 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 261 | 1461970 | 1462170 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 262 | 1612863 | 1613063 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 263 | 2408632 | 2408826 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 264 | 530100 | 530300 | - | NZ_CP023643.1 | Brochothrix thermosphacta |
| 265 | 459111 | 459308 | - | NC_012780.1 | [Eubacterium] eligens ATCC 27750 |
| 266 | 640598 | 640795 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 267 | 371264 | 371458 | - | NC_012115.1 | Nautilia profundicola AmH |
| 268 | 859193 | 859390 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 269 | 1195223 | 1195417 | - | NZ_LR134484.1 | Gemella haemolysans |
| 270 | 2594866 | 2595063 | - | NZ_CP045875.1 | Heliorestis convoluta |
| 271 | 381375 | 381569 | - | NZ_CP027432.2 | Caminibacter pacificus |
| 272 | 2742904 | 2743092 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 273 | 857823 | 858020 | - | NZ_LR130778.1 | Petrocella atlantisensis |
| 274 | 405384 | 405578 | + | NZ_CP059674.1 | Mycoplasma tullyi |
| 275 | 465728 | 465922 | + | NC_018406.1 | Mycoplasma gallisepticum VA94_7994-1-7P |
| 276 | 685388 | 685582 | - | NZ_CP025257.1 | Mesoplasma syrphidae |
| 277 | 2388455 | 2388652 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 278 | 3104023 | 3104217 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 279 | 2210271 | 2210459 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 280 | 10114624 | 10114821 | - | NC_010162.1 | Sorangium cellulosum So ce56 |
| 281 | 577192 | 577380 | - | NZ_LS991949.1 | Mycoplasma alkalescens |
| 282 | 1306011 | 1306208 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 283 | 2196038 | 2196232 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 284 | 427790 | 427987 | + | NZ_CP039887.1 | Neisseria subflava |
| 285 | 1342704 | 1342904 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 286 | 1649362 | 1649559 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 287 | 1321304 | 1321501 | + | NZ_LT906482.1 | Eikenella corrodens |
| 288 | 526308 | 526505 | + | NC_012108.1 | Desulfobacterium autotrophicum HRM2 |
| 289 | 1921318 | 1921515 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 290 | 4380666 | 4380863 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 291 | 2640180 | 2640371 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 292 | 1528658 | 1528852 | + | NZ_CP060715.1 | Erysipelothrix inopinata |
| 293 | 2927688 | 2927885 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 294 | 3049653 | 3049850 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 295 | 1615160 | 1615357 | + | NZ_CP040924.1 | Clostridium thermarum |
| 296 | 1264770 | 1264964 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 297 | 9464718 | 9464915 | + | NZ_CP016211.1 | Minicystis rosea |
| 298 | 800578 | 800775 | + | NZ_CP016786.1 | Clostridium isatidis |
| 299 | 1437079 | 1437276 | - | NZ_CP016786.1 | Clostridium isatidis |
| 300 | 421475 | 421669 | + | NZ_CP043026.1 | Spiroplasma chinense |
| 301 | 4173951 | 4174145 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 302 | 1421264 | 1421458 | - | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 303 | 964794 | 964991 | + | NC_008593.1 | Clostridium novyi NT |
| 304 | 277178 | 277372 | + | NC_022998.1 | Spiroplasma apis B31 |
| 305 | 2740459 | 2740659 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 306 | 1610228 | 1610425 | + | NZ_CP014176.1 | Clostridium argentinense |
| 307 | 701233 | 701427 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 308 | 1722512 | 1722703 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 309 | 1791633 | 1791830 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 310 | 435910 | 436107 | + | NZ_CP031253.1 | Neisseria lactamica |
| 311 | 355248 | 355445 | + | NZ_LS483369.1 | Neisseria cinerea |
| 312 | 367329 | 367526 | + | NZ_CP039886.1 | Neisseria flavescens |
| 313 | 3168790 | 3168987 | + | NZ_CP023671.1 | Clostridium septicum |
| 314 | 4634646 | 4634840 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 315 | 248810 | 249001 | - | NC_007633.1 | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
| 316 | 267403 | 267594 | - | NZ_CP001668.1 | Mycoplasma mycoides subsp. capri str. GM12 |
| 317 | 291247 | 291441 | + | NZ_CP038013.1 | Spiroplasma gladiatoris |
| 318 | 4002272 | 4002466 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 319 | 5083208 | 5083402 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 320 | 964851 | 965045 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 321 | 762738 | 762938 | - | NZ_CP030032.1 | Bradymonas sediminis |
| 322 | 570973 | 571170 | + | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 323 | 644290 | 644487 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 324 | 45773 | 45967 | + | NZ_CP053842.1 | Campylobacter corcagiensis |
| 325 | 3190382 | 3190585 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 326 | 2002525 | 2002722 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 327 | 2115241 | 2115435 | - | NZ_CP060084.1 | Teredinibacter haidensis |
| 328 | 1895967 | 1896161 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 329 | 224802 | 224963 | - | NZ_CP024161.1 | Mycoplasma dispar |
| 330 | 4512744 | 4512938 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 331 | 2980393 | 2980596 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 332 | 1460620 | 1460811 | + | NZ_CP012547.1 | Campylobacter pinnipediorum subsp. pinnipediorum |
| 333 | 125320 | 125511 | - | NZ_CP012541.1 | Campylobacter concisus |
| 334 | 871097 | 871291 | - | NZ_CP048711.1 | Kineobactrum salinum |
| 335 | 966638 | 966826 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 336 | 71510 | 71701 | - | NZ_CP053826.1 | Campylobacter curvus |
| 337 | 2036794 | 2036988 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 338 | 2280482 | 2280676 | - | NZ_CP009467.1 | Vibrio harveyi |
| 339 | 3089663 | 3089863 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 340 | 1208068 | 1208262 | + | NZ_CP045351.1 | Vibrio aquimaris |
| 341 | 1336313 | 1336507 | - | NZ_CP047476.1 | Vibrio astriarenae |
| 342 | 920656 | 920850 | - | NZ_CP016415.1 | Vibrio scophthalmi |
| 343 | 1173799 | 1173993 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 344 | 1210439 | 1210633 | - | NZ_AP019658.1 | Vibrio ponticus |
| 345 | 3290177 | 3290374 | - | NZ_CP013341.1 | Nitrosomonas ureae |
| 346 | 490686 | 490880 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 347 | 2465337 | 2465522 | - | NC_007204.1 | Psychrobacter arcticus 273-4 |
| 348 | 134604 | 134798 | + | NZ_CP033077.1 | Vibrio zhugei |
| 349 | 297110 | 297307 | + | NC_015318.1 | Hippea maritima DSM 10411 |
| 350 | 589050 | 589250 | + | NZ_CP031222.1 | Aquirhabdus parva |
| 351 | 3099754 | 3099948 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 352 | 2057782 | 2057979 | + | NZ_CP064781.1 | Azospira restricta |
| 353 | 1284145 | 1284330 | - | NZ_CP012678.1 | Psychrobacter urativorans |
| 354 | 6738692 | 6738895 | - | NZ_CP036274.1 | Anatilimnocola aggregata |
| 355 | 3096893 | 3097078 | - | NZ_CP014945.1 | Psychrobacter alimentarius |
| 356 | 2433510 | 2433704 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 357 | 2829632 | 2829817 | - | NC_007969.1 | Psychrobacter cryohalolentis K5 |
| 358 | 2090569 | 2090766 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 359 | 3032072 | 3032266 | + | NZ_CP018477.1 | Thermogutta terrifontis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008525.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00707.24 | 0.94 | 337 | 30.0 | same-strand | Translation initiation factor IF-3, C-terminal domain |
| 2 | PF05198.18 | 0.84 | 299 | 29.0 | same-strand | Translation initiation factor IF-3, N-terminal domain |
| 3 | PF00453.20 | 0.96 | 344 | 44.0 | same-strand | Ribosomal protein L20 |
++ More..