Result : Q039F0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0346 protein LSEI_1394 |
| NCBI Accession ID | CP000423.1 |
| Organism | Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) |
| Left | 1382107 |
| Right | 1382349 |
| Strand | + |
| Nucleotide Sequence | ATGCATCGGACTTTTTACGAATATCTCATGACCCTGCGTAACCCCAATGACCATAGTGAAATCGCTGAATTTGCGAAAAATGCCTTTTTGGATCAAAGCTTTCCTAAGCAAGAAAAGGATTACCATCGACTAAGCGATTATCTGGAACTAAACGGCAATTATTTGCCAAGCATGGCCGTTTTTGACGAAACGTATCGCGCCTATGAGGCGAGTGAAAGCACAGGAGGCGATTCGTATCAATAA |
| Sequence | MHRTFYEYLMTLRNPNDHSEIAEFAKNAFLDQSFPKQEKDYHRLSDYLELNGNYLPSMAVFDETYRAYEASESTGGDSYQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11485. Profile Description: YozE SAM-like fold. hypothetical protein; Provisional |
| Pubmed ID | 17030793 |
| Domain | CDD:416295 |
| Functional Category | Others |
| Uniprot ID | Q039F0 |
| ORF Length (Amino Acid) | 80 |
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| Conservation Analysis |
No. of Species: 102
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1346802 | 1347044 | + | NC_014334.2 | Lacticaseibacillus paracasei |
| 2 | 1298290 | 1298532 | + | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 3 | 1336848 | 1337090 | + | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 4 | 1337532 | 1337753 | - | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 5 | 1926360 | 1926581 | - | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 6 | 1123079 | 1123273 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 7 | 1514954 | 1515175 | + | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 8 | 2727018 | 2727236 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 9 | 1796473 | 1796697 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 10 | 420957 | 421181 | + | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 11 | 468038 | 468262 | + | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 12 | 1038306 | 1038530 | - | NZ_CP045007.1 | Latilactobacillus graminis |
| 13 | 825189 | 825386 | - | NZ_CP019981.1 | Pediococcus inopinatus |
| 14 | 2061058 | 2061282 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 15 | 917242 | 917463 | + | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 16 | 937770 | 937994 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 17 | 1888987 | 1889208 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 18 | 1131202 | 1131426 | - | NZ_CP017996.1 | Companilactobacillus crustorum |
| 19 | 1205494 | 1205718 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 20 | 1449864 | 1450085 | - | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 21 | 980034 | 980258 | + | NZ_CP024610.1 | Lactobacillus terrae |
| 22 | 753731 | 753925 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 23 | 658072 | 658302 | - | NZ_CP031513.1 | Bombilactobacillus bombi |
| 24 | 964598 | 964795 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 25 | 985137 | 985361 | + | NZ_CP049366.1 | Companilactobacillus pabuli |
| 26 | 1346503 | 1346727 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 27 | 1041857 | 1042078 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 28 | 759455 | 759652 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 29 | 1445262 | 1445486 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 30 | 1531156 | 1531383 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 31 | 1259891 | 1260088 | - | NZ_CP059829.1 | Lactobacillus ultunensis |
| 32 | 2435831 | 2436049 | - | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 33 | 1136797 | 1137021 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 34 | 1618954 | 1619172 | + | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 35 | 676174 | 676395 | - | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 36 | 927624 | 927845 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 37 | 2927755 | 2927976 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 38 | 909476 | 909670 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 39 | 2031895 | 2032113 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 40 | 771172 | 771369 | + | NZ_CP029476.1 | Lactobacillus apis |
| 41 | 1114368 | 1114562 | - | NZ_AP018549.1 | Lactobacillus paragasseri |
| 42 | 960252 | 960449 | - | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 43 | 735710 | 735931 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 44 | 776832 | 777029 | + | NZ_CP015444.1 | Lactobacillus helveticus |
| 45 | 1275131 | 1275352 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 46 | 1060553 | 1060777 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 47 | 1076570 | 1076767 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 48 | 1957568 | 1957789 | + | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 49 | 798604 | 798825 | + | NZ_CP045530.1 | Limosilactobacillus pontis |
| 50 | 950251 | 950448 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 51 | 1305517 | 1305711 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 52 | 1061946 | 1062140 | - | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 53 | 1899775 | 1899990 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 54 | 819141 | 819335 | + | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 55 | 1160186 | 1160383 | - | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 56 | 896820 | 897017 | + | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 57 | 1125392 | 1125613 | - | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 58 | 727372 | 727569 | - | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 59 | 2748454 | 2748675 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 60 | 857474 | 857695 | + | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 61 | 1891258 | 1891491 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 62 | 1987092 | 1987325 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 63 | 1906682 | 1906915 | - | NZ_LT906444.1 | Listeria welshimeri |
| 64 | 1537556 | 1537756 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 65 | 959061 | 959282 | - | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 66 | 3804209 | 3804430 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 67 | 980168 | 980371 | + | NZ_LR134483.1 | Listeria grayi |
| 68 | 3850677 | 3850895 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 69 | 1933037 | 1933270 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 70 | 840889 | 841083 | + | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 71 | 4434066 | 4434260 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 72 | 2687291 | 2687494 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 73 | 671526 | 671744 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 74 | 2163537 | 2163761 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 75 | 3310907 | 3311107 | + | NZ_CP043404.1 | Bacillus safensis |
| 76 | 958909 | 959109 | + | NZ_CP014324.1 | Oenococcus oeni |
| 77 | 2956420 | 2956647 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 78 | 960920 | 961147 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 79 | 732945 | 733172 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 80 | 2228869 | 2229069 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 81 | 2151675 | 2151875 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 82 | 1305191 | 1305412 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 83 | 2071975 | 2072172 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 84 | 2081787 | 2081987 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 85 | 670753 | 670980 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 86 | 931333 | 931560 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 87 | 3799211 | 3799426 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 88 | 3984518 | 3984718 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 89 | 3401692 | 3401892 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 90 | 1977451 | 1977651 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 91 | 2138868 | 2139068 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 92 | 2863286 | 2863504 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 93 | 307545 | 307748 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 94 | 221517 | 221744 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 95 | 2165421 | 2165642 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 96 | 171041 | 171238 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 97 | 2142544 | 2142744 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 98 | 2348354 | 2348551 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 99 | 2247170 | 2247367 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 100 | 650081 | 650299 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 101 | 4986136 | 4986354 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 102 | 1164101 | 1164319 | + | NZ_CP049886.1 | Vagococcus coleopterorum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014334.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02645.18 | 0.63 | 64 | 1607.0 | same-strand | Uncharacterised protein, DegV family COG1307 |
| 2 | PF13472.8 | 0.62 | 63 | 637.0 | same-strand | GDSL-like Lipase/Acylhydrolase family |
| 3 | PF00657.24 | 0.62 | 63 | 637.0 | same-strand | GDSL-like Lipase/Acylhydrolase |
| 4 | PF09911.11 | 0.62 | 63 | 15 | same-strand | Uncharacterized protein conserved in bacteria (DUF2140) |
| 5 | PF01351.20 | 0.61 | 62 | 893.0 | same-strand | Ribonuclease HII |
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