Result : Q034Y5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | CP000423.1 |
| Organism | Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) |
| Left | 2470018 |
| Right | 2470320 |
| Strand | - |
| Nucleotide Sequence | ATGGAAGCACGCGATATCATTTTACGTCCGATCGTCACCGAGCAATCGATGGCTGAAATGGATAACCGTAAATACACATTCGAAGTTGCACTGCATGCAACCAAGCCGCAAGTTCGCAAGGCTGTTGAAGAAATCTTCGGTGTGAAGGTTGTCAACGTCAACATCGCGAACGTTCGCGGTAAGAAGAAGCGTCAAGGCCGTTACGAAGGCATGACGCGTCGTCGTCGCAAGGCATTGATTGCCTTGAGCGCCGATTCCAAAGAAATCAAGATCTTCGCTGACGAAGATAACGATAAAAAGTAA |
| Sequence | MEARDIILRPIVTEQSMAEMDNRKYTFEVALHATKPQVRKAVEEIFGVKVVNVNIANVRGKKKRQGRYEGMTRRRRKALIALSADSKEIKIFADEDNDKK |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | 17030793 |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q034Y5 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 344
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2404754 | 2405056 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 2 | 2445890 | 2446192 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 3 | 2445829 | 2446131 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 4 | 1566911 | 1567207 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 5 | 1401660 | 1401956 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 6 | 1513139 | 1513432 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 7 | 1320317 | 1320613 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 8 | 2395730 | 2396017 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 9 | 606720 | 607004 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 10 | 220376 | 220660 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 11 | 1353251 | 1353535 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 12 | 2213927 | 2214214 | + | NZ_CP012033.1 | Levilactobacillus koreensis |
| 13 | 285280 | 285567 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 14 | 527574 | 527861 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 15 | 790063 | 790350 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 16 | 2265842 | 2266129 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 17 | 403452 | 403748 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 18 | 562456 | 562743 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 19 | 342749 | 343036 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 20 | 2096916 | 2097203 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 21 | 739366 | 739650 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 22 | 351974 | 352270 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 23 | 1365769 | 1366056 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 24 | 1283016 | 1283303 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 25 | 624999 | 625283 | + | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 26 | 398995 | 399282 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 27 | 913589 | 913876 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 28 | 395219 | 395524 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 29 | 2023907 | 2024194 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 30 | 1391238 | 1391525 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 31 | 334636 | 334932 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 32 | 337583 | 337879 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 33 | 198106 | 198393 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 34 | 1263527 | 1263814 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 35 | 1425170 | 1425454 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 36 | 2098321 | 2098608 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 37 | 1714499 | 1714786 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 38 | 1101164 | 1101451 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 39 | 339341 | 339637 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 40 | 1789175 | 1789462 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 41 | 1566727 | 1567014 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 42 | 1549273 | 1549578 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 43 | 1568027 | 1568314 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 44 | 451342 | 451629 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 45 | 445514 | 445801 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 46 | 292228 | 292530 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 47 | 355440 | 355745 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 48 | 425552 | 425839 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 49 | 271361 | 271663 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 50 | 290850 | 291134 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 51 | 391384 | 391704 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 52 | 1469768 | 1470079 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 53 | 92871 | 93155 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 54 | 178889 | 179176 | + | NZ_CP061835.1 | Weissella viridescens |
| 55 | 1007892 | 1008179 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 56 | 33789 | 34076 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 57 | 1811461 | 1811748 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 58 | 307971 | 308258 | + | NZ_CP027563.1 | Weissella confusa |
| 59 | 101731 | 102018 | + | NZ_CP017326.1 | Weissella soli |
| 60 | 1283583 | 1283870 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 61 | 149482 | 149769 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 62 | 269083 | 269379 | + | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 63 | 122773 | 123060 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 64 | 1775786 | 1776073 | - | NZ_LS483405.1 | Levilactobacillus brevis |
| 65 | 428880 | 429164 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 66 | 1716256 | 1716543 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 67 | 1526868 | 1527155 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 68 | 161896 | 162183 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 69 | 1443002 | 1443289 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 70 | 513885 | 514172 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 71 | 807972 | 808259 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 72 | 1280690 | 1280995 | - | NZ_CP029476.1 | Lactobacillus apis |
| 73 | 1845215 | 1845502 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 74 | 544462 | 544761 | + | NZ_CP014324.1 | Oenococcus oeni |
| 75 | 380170 | 380454 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 76 | 503574 | 503858 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 77 | 1100023 | 1100322 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 78 | 148345 | 148629 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 79 | 1380496 | 1380807 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 80 | 548315 | 548608 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 81 | 2599406 | 2599690 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 82 | 2704149 | 2704433 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 83 | 1062825 | 1063118 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 84 | 1525119 | 1525421 | - | NZ_CP014161.1 | Aerococcus urinae |
| 85 | 1966124 | 1966411 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 86 | 2609723 | 2610007 | - | NZ_LT906444.1 | Listeria welshimeri |
| 87 | 2725290 | 2725574 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 88 | 2341130 | 2341414 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 89 | 2600734 | 2601018 | - | NZ_LR134483.1 | Listeria grayi |
| 90 | 1477111 | 1477398 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 91 | 961355 | 961654 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 92 | 1664700 | 1664987 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 93 | 576997 | 577284 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 94 | 817743 | 818030 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 95 | 1491277 | 1491564 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 96 | 1778465 | 1778755 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 97 | 424698 | 424988 | + | NZ_CP014164.1 | Aerococcus viridans |
| 98 | 110274 | 110561 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 99 | 1408343 | 1408630 | - | NZ_CP043404.1 | Bacillus safensis |
| 100 | 139997 | 140281 | + | NZ_CP012024.1 | Bacillus smithii |
| 101 | 143568 | 143855 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 102 | 1155146 | 1155433 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 103 | 143441 | 143731 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 104 | 3793302 | 3793589 | - | NZ_CP011937.1 | Bacillus velezensis |
| 105 | 137952 | 138239 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 106 | 136992 | 137279 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 107 | 200953 | 201237 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 108 | 251563 | 251847 | + | NZ_CP053989.1 | Niallia circulans |
| 109 | 132232 | 132516 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 110 | 2155415 | 2155702 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 111 | 142703 | 142987 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 112 | 272980 | 273267 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 113 | 136933 | 137220 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 114 | 136693 | 136980 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 115 | 136819 | 137106 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 116 | 106713 | 107000 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 117 | 1872422 | 1872709 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 118 | 482113 | 482400 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 119 | 163413 | 163697 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 120 | 143279 | 143563 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 121 | 147934 | 148218 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 122 | 244767 | 245051 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 123 | 2438960 | 2439244 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 124 | 332033 | 332317 | + | NZ_CP014616.1 | Sporosarcina psychrophila |
| 125 | 138844 | 139128 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 126 | 1619169 | 1619453 | - | NZ_CP013661.2 | Planococcus kocurii |
| 127 | 143424 | 143708 | + | NZ_CP019401.1 | Planococcus faecalis |
| 128 | 2574726 | 2575010 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 129 | 147933 | 148217 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 130 | 1944901 | 1945185 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 131 | 129309 | 129596 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 132 | 2822961 | 2823248 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 133 | 143739 | 144026 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 134 | 2266765 | 2267052 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 135 | 63564 | 63854 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 136 | 70671 | 70961 | + | NZ_CP065211.1 | Enterococcus lactis |
| 137 | 588902 | 589192 | - | NZ_CP023011.2 | Enterococcus hirae |
| 138 | 3158926 | 3159216 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 139 | 3099158 | 3099445 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 140 | 140282 | 140566 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 141 | 121222 | 121509 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 142 | 3443591 | 3443881 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 143 | 2697628 | 2697912 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 144 | 1628259 | 1628549 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 145 | 4046534 | 4046821 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 146 | 4133800 | 4134084 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 147 | 2115019 | 2115306 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 148 | 140910 | 141194 | + | NZ_CP016538.2 | Planococcus maritimus |
| 149 | 140751 | 141035 | + | NZ_CP059540.1 | Planococcus maritimus |
| 150 | 3329069 | 3329353 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 151 | 70497 | 70784 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 152 | 135103 | 135390 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 153 | 167583 | 167870 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 154 | 431743 | 432027 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 155 | 131673 | 131960 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 156 | 123046 | 123333 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 157 | 2124065 | 2124352 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 158 | 254267 | 254560 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 159 | 129617 | 129901 | + | NZ_LS483476.1 | Lederbergia lentus |
| 160 | 59478 | 59765 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 161 | 152918 | 153208 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 162 | 348791 | 349078 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 163 | 1755135 | 1755419 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 164 | 399195 | 399485 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 165 | 757741 | 758037 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 166 | 4499678 | 4499962 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 167 | 1194976 | 1195263 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 168 | 82879 | 83169 | + | NZ_CP014150.1 | Paeniclostridium sordellii |
| 169 | 3265732 | 3266019 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 170 | 2062357 | 2062650 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 171 | 1288093 | 1288377 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 172 | 170401 | 170691 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 173 | 68062 | 68352 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 174 | 1962648 | 1962941 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 175 | 131252 | 131536 | + | NZ_CP016540.2 | Planococcus versutus |
| 176 | 2976150 | 2976434 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 177 | 158118 | 158408 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 178 | 140219 | 140512 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 179 | 142634 | 142891 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 180 | 172246 | 172530 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 181 | 1942417 | 1942710 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 182 | 2013261 | 2013554 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 183 | 2174185 | 2174475 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 184 | 201645 | 201932 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 185 | 128893 | 129183 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 186 | 2432922 | 2433212 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 187 | 1134189 | 1134476 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 188 | 2292914 | 2293207 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 189 | 415983 | 416276 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 190 | 4991297 | 4991587 | - | NZ_CP040336.1 | Bacillus luti |
| 191 | 122586 | 122876 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 192 | 128029 | 128319 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 193 | 128231 | 128521 | + | NC_011725.1 | Bacillus cereus B4264 |
| 194 | 127950 | 128240 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 195 | 651627 | 651902 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 196 | 1314904 | 1315194 | - | NZ_CP027228.1 | Mogibacterium diversum |
| 197 | 236814 | 237101 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 198 | 138245 | 138535 | + | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 199 | 1403403 | 1403693 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 200 | 1980149 | 1980424 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 201 | 1279694 | 1279969 | + | NZ_CP027770.1 | Staphylococcus felis |
| 202 | 311702 | 311995 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 203 | 3953468 | 3953758 | - | NZ_CP019870.1 | Clostridioides difficile |
| 204 | 1373243 | 1373530 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 205 | 2307368 | 2307652 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 206 | 405063 | 405308 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 207 | 336471 | 336713 | + | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 208 | 405366 | 405608 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 209 | 3935622 | 3935864 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 210 | 154965 | 155222 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 211 | 55507 | 55794 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 212 | 1769971 | 1770246 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 213 | 705695 | 705970 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 214 | 108312 | 108587 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 215 | 182026 | 182316 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 216 | 2233417 | 2233692 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 217 | 3450598 | 3450888 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 218 | 148375 | 148632 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 219 | 221369 | 221650 | + | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 220 | 1059084 | 1059359 | - | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 221 | 129688 | 129975 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 222 | 145411 | 145698 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 223 | 1784087 | 1784362 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 224 | 4737088 | 4737375 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 225 | 451309 | 451605 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 226 | 709406 | 709681 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 227 | 761492 | 761767 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 228 | 493284 | 493583 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 229 | 2379832 | 2380131 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 230 | 268037 | 268309 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 231 | 208937 | 209212 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 232 | 1441311 | 1441598 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 233 | 475735 | 476013 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 234 | 1061995 | 1062282 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 235 | 808558 | 808848 | - | NZ_LT635475.1 | Ezakiella massiliensis |
| 236 | 3722124 | 3722414 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 237 | 2316216 | 2316491 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 238 | 769750 | 770025 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 239 | 723120 | 723395 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 240 | 4504321 | 4504563 | - | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 241 | 1614205 | 1614447 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 242 | 2577258 | 2577545 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 243 | 2272076 | 2272351 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 244 | 334222 | 334467 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 245 | 1979260 | 1979535 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 246 | 633703 | 633990 | + | NZ_CP009761.1 | Parvimonas micra |
| 247 | 3720396 | 3720683 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 248 | 2170601 | 2170876 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 249 | 51070 | 51357 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 250 | 2036976 | 2037272 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 251 | 3269677 | 3269919 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 252 | 558708 | 558986 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 253 | 1952522 | 1952809 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 254 | 860098 | 860385 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 255 | 223290 | 223577 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 256 | 2111278 | 2111568 | - | NC_014654.1 | Halanaerobium hydrogeniformans |
| 257 | 490453 | 490752 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 258 | 844332 | 844631 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 259 | 756121 | 756396 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 260 | 142995 | 143282 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 261 | 789811 | 790086 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 262 | 8376471 | 8376761 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 263 | 1728916 | 1729191 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 264 | 1176108 | 1176353 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 265 | 1782333 | 1782629 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 266 | 1762919 | 1763215 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 267 | 1483248 | 1483517 | - | NZ_AP017470.1 | Thermotomaculum hydrothermale |
| 268 | 896648 | 896923 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 269 | 2201211 | 2201486 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 270 | 170776 | 171063 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 271 | 3077390 | 3077641 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 272 | 3273631 | 3273915 | - | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 273 | 126368 | 126652 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 274 | 4578942 | 4579232 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 275 | 148860 | 149147 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 276 | 1754660 | 1754956 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 277 | 1968022 | 1968318 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 278 | 292482 | 292778 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 279 | 1437905 | 1438180 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 280 | 86982 | 87281 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 281 | 1717823 | 1718119 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 282 | 241328 | 241579 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 283 | 3140687 | 3140929 | - | NZ_LR699011.1 | Roseburia hominis |
| 284 | 5020287 | 5020547 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 285 | 1844047 | 1844337 | - | NC_017455.1 | Halanaerobium praevalens DSM 2228 |
| 286 | 2259110 | 2259373 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 287 | 193441 | 193722 | - | NZ_CP046314.1 | Gemella morbillorum |
| 288 | 129284 | 129574 | + | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 289 | 787266 | 787541 | + | NZ_AP018587.1 | Staphylococcus caprae |
| 290 | 1508172 | 1508447 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 291 | 2541988 | 2542275 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 292 | 1473370 | 1473654 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 293 | 711332 | 711622 | + | NZ_CP048649.1 | Aminipila butyrica |
| 294 | 610731 | 611006 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 295 | 1983704 | 1983979 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 296 | 239383 | 239658 | + | NZ_CP047361.1 | Macrococcus canis |
| 297 | 3758050 | 3758340 | - | NC_014624.2 | Eubacterium callanderi |
| 298 | 2165340 | 2165630 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
| 299 | 1377836 | 1378126 | + | NZ_CP019962.1 | Eubacterium limosum |
| 300 | 2688082 | 2688357 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 301 | 1669466 | 1669744 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 302 | 181189 | 181476 | + | NZ_CP034118.1 | Staphylospora marina |
| 303 | 1229676 | 1229966 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 304 | 2265447 | 2265740 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 305 | 919840 | 920085 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 306 | 412582 | 412872 | + | NZ_CP011391.1 | Faecalibaculum rodentium |
| 307 | 3859542 | 3859784 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 308 | 246682 | 246972 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 309 | 354642 | 354935 | + | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 310 | 2256120 | 2256413 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 311 | 324025 | 324300 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 312 | 1825868 | 1826110 | - | NZ_CP035130.1 | Gudongella oleilytica |
| 313 | 2132821 | 2133072 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 314 | 35587 | 35877 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 315 | 3821983 | 3822273 | - | NZ_CP009687.1 | Clostridium aceticum |
| 316 | 2007019 | 2007300 | + | NZ_LT996885.1 | Dialister massiliensis |
| 317 | 430827 | 431120 | + | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 318 | 2076895 | 2077140 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 319 | 4444125 | 4444370 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 320 | 560947 | 561237 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 321 | 48694 | 48975 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 322 | 1933067 | 1933354 | - | NC_022567.1 | Adlercreutzia equolifaciens DSM 19450 |
| 323 | 4437514 | 4437807 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 324 | 4369137 | 4369394 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 325 | 666584 | 666880 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 326 | 267934 | 268227 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 327 | 1223454 | 1223729 | - | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 328 | 852175 | 852459 | + | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 329 | 646232 | 646516 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 330 | 474497 | 474778 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 331 | 2879855 | 2880097 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 332 | 828432 | 828728 | - | NC_010003.1 | Petrotoga mobilis SJ95 |
| 333 | 1239562 | 1239846 | + | NZ_CP060715.1 | Erysipelothrix inopinata |
| 334 | 137954 | 138244 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 335 | 173125 | 173394 | + | NZ_LN824141.1 | Defluviitoga tunisiensis |
| 336 | 305569 | 305823 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 337 | 1693289 | 1693543 | + | NC_022795.1 | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 |
| 338 | 1143204 | 1143488 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 339 | 1156579 | 1156875 | + | NZ_AP018712.1 | Tepiditoga spiralis |
| 340 | 2597336 | 2597581 | - | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 341 | 506906 | 507154 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 342 | 649642 | 649929 | + | NZ_CP014176.1 | Clostridium argentinense |
| 343 | 3436645 | 3436929 | - | NZ_AP014924.1 | Limnochorda pilosa |
| 344 | 1523035 | 1523316 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 345 | 1329021 | 1329305 | - | NZ_CP013213.1 | Erysipelothrix larvae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014334.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00252.20 | 0.99 | 342 | 2239 | same-strand | Ribosomal protein L16p/L10e |
| 2 | PF00189.22 | 0.99 | 342 | 1567 | same-strand | Ribosomal protein S3, C-terminal domain |
| 3 | PF07650.19 | 0.99 | 342 | 1567 | same-strand | KH domain |
| 4 | PF00237.21 | 0.99 | 342 | 1217 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00203.23 | 1.0 | 343 | 918.0 | same-strand | Ribosomal protein S19 |
| 6 | PF03947.20 | 1.0 | 343 | 30.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 7 | PF00181.25 | 1.0 | 343 | 30.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 8 | PF00573.24 | 1.0 | 343 | 0.0 | same-strand | Ribosomal protein L4/L1 family |
| 9 | PF00338.24 | 1.0 | 344 | 1327 | same-strand | Ribosomal protein S10p/S20e |
++ More..