Result : Q02730
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exopolysaccharide production repressor protein |
| NCBI Accession ID | L05588.1 |
| Organism | Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) |
| Left | 261 |
| Right | 557 |
| Strand | - |
| Nucleotide Sequence | ATGTTCGCACCGCGTGTTTTTCTGAGCATGATCGGCGCTTTGGCGGCTTTTGCCGTTGCAACTTATTACCTCAATGGATCGCTCGCCTCGACGGCGATCCAGACCCTGATCTGCGCGGTCCTCATTCAGGTCGGCTACTTCATCGCCGTCCTGTTCCTCGTATGGAAAGAGGCGCGCGAGCGCCGTAGGCTTTCTTCACAGAAGCAGTTCATGACGGCCGAGGCAGCCAACGATGAGAAGCAGCCAGGAAAGGTCTCGCTGCGCAGACTGAACCGGCCTCATCATCTCAATTCCTGA |
| Sequence | MFAPRVFLSMIGALAAFAVATYYLNGSLASTAIQTLICAVLIQVGYFIAVLFLVWKEARERRRLSSQKQFMTAEAANDEKQPGKVSLRRLNRPHHLNS |
| Source of smORF | Swiss-Prot |
| Function | Inhibition of exopolysaccharide synthesis (EPS) and nodulation ability (NOD). |
| Pubmed ID | 8439670 2050634 11481431 11474104 |
| Domain | CDD:402598 |
| Functional Category | Others |
| Uniprot ID | Q02730 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 10
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1174318 | 1174614 | + | NC_020560.1 | Sinorhizobium meliloti 2011 |
| 2 | 749071 | 749367 | - | NZ_CP023068.1 | Ensifer sojae CCBAU 05684 |
| 3 | 1338392 | 1338688 | - | NZ_CP034910.1 | Ensifer alkalisoli |
| 4 | 1363077 | 1363367 | + | NZ_CP013110.1 | Sinorhizobium americanum |
| 5 | 1111091 | 1111381 | + | NZ_CP041241.1 | Ensifer mexicanus |
| 6 | 1520928 | 1521215 | + | NZ_CP029452.1 | Sinorhizobium fredii CCBAU 25509 |
| 7 | 962405 | 962683 | + | NZ_CP015881.1 | Ensifer adhaerens |
| 8 | 3002353 | 3002640 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 9 | 1240895 | 1241173 | - | NZ_CP048635.1 | Rhizobium oryzihabitans |
| 10 | 1290870 | 1291148 | - | NZ_CP061004.1 | Agrobacterium tumefaciens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP023068.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF16363.7 | 0.7 | 7 | 5147 | same-strand | GDP-mannose 4,6 dehydratase |
| 2 | PF01370.23 | 0.7 | 7 | 5147 | same-strand | NAD dependent epimerase/dehydratase family |
| 3 | PF01757.24 | 1.0 | 10 | 4086.5 | opposite-strand | Acyltransferase family |
| 4 | PF04932.17 | 0.8 | 8 | 2779.0 | opposite-strand | O-Antigen ligase |
| 5 | PF02563.18 | 0.8 | 8 | 1521.0 | opposite-strand | Polysaccharide biosynthesis/export protein |
| 6 | PF02397.18 | 0.8 | 8 | 774.0 | opposite-strand | Bacterial sugar transferase |
| 7 | PF13641.8 | 0.9 | 9 | 147.0 | same-strand | Glycosyltransferase like family 2 |
| 8 | PF13704.8 | 0.7 | 7 | 149 | same-strand | Glycosyl transferase family 2 |
| 9 | PF00722.23 | 0.6 | 6 | 3300.0 | same-strand | Glycosyl hydrolases family 16 |
| 10 | PF06439.13 | 0.6 | 6 | 3300.0 | same-strand | Domain of Unknown Function (DUF1080) |
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