* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04295.15
|
0.86
|
6
|
3558.5
|
same-strand
|
D-galactarate dehydratase / Altronate hydrolase, C terminus
|
2
|
PF08666.14
|
0.86
|
6
|
3558.5
|
same-strand
|
SAF domain
|
3
|
PF01925.21
|
1.0
|
7
|
3379
|
opposite-strand
|
Sulfite exporter TauE/SafE
|
4
|
PF05163.14
|
1.0
|
7
|
2690
|
opposite-strand
|
DinB family
|
5
|
PF12867.9
|
1.0
|
7
|
2690
|
opposite-strand
|
DinB superfamily
|
6
|
PF18801.3
|
1.0
|
7
|
-10
|
same-strand
|
response regulator aspartate phosphatase H, N terminal
|
7
|
PF13424.8
|
1.0
|
7
|
-10
|
same-strand
|
Tetratricopeptide repeat
|
8
|
PF07719.19
|
1.0
|
7
|
-10
|
same-strand
|
Tetratricopeptide repeat
|
9
|
PF00515.30
|
1.0
|
7
|
-10
|
same-strand
|
Tetratricopeptide repeat
|
10
|
PF13176.8
|
1.0
|
7
|
-10
|
same-strand
|
Tetratricopeptide repeat
|
11
|
PF13181.8
|
1.0
|
7
|
-10
|
same-strand
|
Tetratricopeptide repeat
|
12
|
PF03795.16
|
0.71
|
5
|
32
|
opposite-strand
|
YCII-related domain
|
13
|
PF01510.27
|
1.0
|
7
|
406
|
same-strand
|
N-acetylmuramoyl-L-alanine amidase
|
14
|
PF01471.20
|
1.0
|
7
|
406
|
same-strand
|
Putative peptidoglycan binding domain
|
15
|
PF01476.22
|
1.0
|
7
|
406
|
same-strand
|
LysM domain
|
16
|
PF08000.13
|
0.71
|
5
|
1400
|
opposite-strand
|
Bacterial PH domain
|
17
|
PF05908.13
|
1.0
|
7
|
1884
|
same-strand
|
Poly-gamma-glutamate hydrolase
|
18
|
PF05067.14
|
0.86
|
6
|
2562.0
|
same-strand
|
Manganese containing catalase
|
++ More..