Result : P9WM27
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein Rv1322 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 1484982 |
| Right | 1485278 |
| Strand | + |
| Nucleotide Sequence | ATGGCTCGGCGCCGCAAACCGCTGCACCGGCAGCGGCCGGAACCGCCGTCGTGGGCCCTGCGCCGAGTGGAAGCGGGGCCCGATGGCCACGAGTATGAAGTACGACCGGTCGCTGCGGCCCGCGCCGTCAAGACCTATCGCTGTCCGGGGTGTGATCACGAAATCCGTTCCGGTACTGCACATGTGGTAGTGTGGCCGACTGACTTGCCGCAAGCCGGCGTCGATGACCGGCGTCACTGGCACACCCCGTGCTGGGCGAACCGAGCAACCCGCGGTCCGACTCGAAAATGGACCTAG |
| Sequence | MARRRKPLHRQRPEPPSWALRRVEAGPDGHEYEVRPVAAARAVKTYRCPGCDHEIRSGTAHVVVWPTDLPQAGVDDRRHWHTPCWANRATRGPTRKWT |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 9634230 21969609 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P9WM27 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 87
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1484982 | 1485278 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 1509672 | 1509968 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 1037899 | 1038186 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 4 | 1404415 | 1404708 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 5 | 4071243 | 4071536 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 6 | 185826 | 186071 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 7 | 594409 | 594696 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 8 | 3894938 | 3895177 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 9 | 5601805 | 5602101 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 10 | 2089892 | 2090188 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 11 | 1322131 | 1322421 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 12 | 4233635 | 4233925 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 13 | 4158973 | 4159212 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 14 | 2660784 | 2661083 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 15 | 1383933 | 1384175 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 16 | 5230552 | 5230806 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 17 | 2772533 | 2772829 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 18 | 2998819 | 2999127 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 19 | 1653176 | 1653418 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 20 | 1407981 | 1408223 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 21 | 1832896 | 1833192 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 22 | 686784 | 687080 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 23 | 1399184 | 1399480 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 24 | 439334 | 439630 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 25 | 126525 | 126821 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 26 | 2529512 | 2529802 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 27 | 5498972 | 5499214 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 28 | 3042916 | 3043155 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 29 | 3360929 | 3361237 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 30 | 2372285 | 2372536 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 31 | 4311529 | 4311822 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 32 | 5025487 | 5025786 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 33 | 4025794 | 4026090 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 34 | 2967390 | 2967686 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 35 | 2246496 | 2246750 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 36 | 3176737 | 3176979 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 37 | 2830415 | 2830723 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 38 | 5301778 | 5302020 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 39 | 40449 | 40745 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 40 | 4221078 | 4221386 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 41 | 4447850 | 4448092 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 42 | 3108514 | 3108807 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 43 | 1583497 | 1583805 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 44 | 314099 | 314392 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 45 | 3869115 | 3869354 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 46 | 4616630 | 4616875 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 47 | 1454021 | 1454326 | + | NZ_CP014955.1 | Mycobacteroides abscessus |
| 48 | 4789178 | 4789465 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 49 | 365800 | 366084 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 50 | 852644 | 852937 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 51 | 4288397 | 4288687 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 52 | 589617 | 589868 | - | NZ_AP022562.1 | Mycobacterium novum |
| 53 | 1738717 | 1739007 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 54 | 1415816 | 1416067 | + | NC_015576.1 | Mycolicibacter sinensis |
| 55 | 5228499 | 5228765 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 56 | 1310559 | 1310858 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 57 | 3721556 | 3721873 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 58 | 1340593 | 1340898 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 59 | 6997115 | 6997366 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 60 | 2266479 | 2266730 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 61 | 1883434 | 1883754 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 62 | 7769326 | 7769577 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 63 | 4021617 | 4021865 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 64 | 3863876 | 3864178 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 65 | 6592334 | 6592639 | - | NZ_AP023396.1 | Nocardia wallacei |
| 66 | 1410520 | 1410777 | + | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 67 | 5554963 | 5555265 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 68 | 9734107 | 9734400 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 69 | 7029192 | 7029485 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 70 | 2095679 | 2095969 | + | NZ_LR134352.1 | Nocardia asteroides |
| 71 | 7167631 | 7167924 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 72 | 2085915 | 2086157 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 73 | 5646567 | 5646860 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 74 | 1186702 | 1187007 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 75 | 8098145 | 8098438 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 76 | 10327804 | 10328091 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 77 | 1273072 | 1273359 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 78 | 1171345 | 1171653 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 79 | 7311627 | 7311914 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 80 | 1536538 | 1536843 | + | NZ_AP017900.1 | Nocardia seriolae |
| 81 | 4770061 | 4770360 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 82 | 1637941 | 1638228 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 83 | 5532139 | 5532399 | - | NZ_CP016353.1 | Prauserella marina |
| 84 | 2147921 | 2148163 | - | NZ_CP015961.1 | Dietzia timorensis |
| 85 | 8526570 | 8526875 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 86 | 982820 | 983065 | + | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 87 | 985035 | 985310 | - | NZ_CP060789.1 | Tessaracoccus defluvii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00211.22 | 0.68 | 59 | 761.5 | opposite-strand | Adenylate and Guanylate cyclase catalytic domain |
| 2 | PF00672.27 | 0.71 | 62 | 764.5 | opposite-strand | HAMP domain |
| 3 | PF01939.18 | 0.78 | 68 | 23.0 | same-strand | Endonuclease NucS |
| 4 | PF13669.8 | 0.84 | 73 | 11 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 5 | PF00903.27 | 0.84 | 73 | 11 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 6 | PF00108.25 | 0.8 | 70 | 568.5 | same-strand | Thiolase, N-terminal domain |
| 7 | PF02803.20 | 0.8 | 70 | 568.5 | same-strand | Thiolase, C-terminal domain |
| 8 | PF14561.8 | 0.78 | 68 | 2200.0 | same-strand | Tetratricopeptide repeat |
| 9 | PF00085.22 | 0.76 | 66 | 2200.0 | same-strand | Thioredoxin |
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