* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00849.24
|
1.0
|
2
|
3148.0
|
same-strand
|
RNA pseudouridylate synthase
|
2
|
PF01479.27
|
1.0
|
2
|
3148.0
|
same-strand
|
S4 domain
|
3
|
PF09864.11
|
1.0
|
2
|
2548.0
|
opposite-strand
|
Membrane-bound lysozyme-inhibitor of c-type lysozyme
|
4
|
PF07007.14
|
1.0
|
2
|
2548.0
|
opposite-strand
|
Lysozyme inhibitor LprI
|
5
|
PF01152.23
|
1.0
|
2
|
2083.0
|
opposite-strand
|
Bacterial-like globin
|
6
|
PF00106.27
|
1.0
|
2
|
426.0
|
same-strand
|
short chain dehydrogenase
|
7
|
PF08659.12
|
1.0
|
2
|
426.0
|
same-strand
|
KR domain
|
8
|
PF13561.8
|
1.0
|
2
|
22.0
|
same-strand
|
Enoyl-(Acyl carrier protein) reductase
|
9
|
PF10604.11
|
1.0
|
2
|
110.0
|
same-strand
|
Polyketide cyclase / dehydrase and lipid transport
|
10
|
PF07733.14
|
1.0
|
2
|
609.0
|
same-strand
|
Bacterial DNA polymerase III alpha NTPase domain
|
11
|
PF17657.3
|
1.0
|
2
|
609.0
|
same-strand
|
Bacterial DNA polymerase III alpha subunit finger domain
|
12
|
PF02811.21
|
1.0
|
2
|
609.0
|
same-strand
|
PHP domain
|
13
|
PF14579.8
|
1.0
|
2
|
609.0
|
same-strand
|
Helix-hairpin-helix motif
|
14
|
PF01336.27
|
1.0
|
2
|
609.0
|
same-strand
|
OB-fold nucleic acid binding domain
|
15
|
PF01469.20
|
1.0
|
2
|
4212.0
|
opposite-strand
|
Pentapeptide repeats (8 copies)
|
16
|
PF00823.21
|
1.0
|
2
|
4212.0
|
opposite-strand
|
PPE family
|
++ More..