Result : P9WLB1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative secreted protein Rv0236.1 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 286898 |
| Right | 287071 |
| Strand | - |
| Nucleotide Sequence | ATGAACCGGATCGTCGCGCCCGCCGCCGCAAGCGTGGTGGTTGGTCTGTTGCTGGGCGCGGCCGCGATCTTCGGAGTGACCCTGATGGTGCAGCAGGACAAGAAACCGCCACTCCCCGGGGGCGATCCGTCGTCATCAGTGCTCAACCGGGTCGAGTACGGTAACCGTAGCTAG |
| Sequence | MNRIVAPAAASVVVGLLLGAAAIFGVTLMVQQDKKPPLPGGDPSSSVLNRVEYGNRS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam11021. Profile Description: Protein of unknown function (DUF2613). This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known. |
| Pubmed ID | 9634230 12368430 21969609 |
| Domain | CDD:402559 |
| Functional Category | Others |
| Uniprot ID | P9WLB1 |
| ORF Length (Amino Acid) | 57 |
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| Conservation Analysis |
No. of Species: 81
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 286898 | 287071 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 293656 | 293829 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 4196028 | 4196201 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 4 | 432519 | 432692 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 5 | 3666263 | 3666436 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 6 | 58232 | 58405 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 7 | 4856181 | 4856354 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 8 | 3974551 | 3974724 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 9 | 4043734 | 4043907 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 10 | 2163178 | 2163351 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 11 | 3199276 | 3199449 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 12 | 625128 | 625301 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 13 | 4457646 | 4457819 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 14 | 4658394 | 4658567 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 15 | 455915 | 456088 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 16 | 1167284 | 1167457 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 17 | 3810686 | 3810859 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 18 | 3508629 | 3508769 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 19 | 837009 | 837182 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 20 | 1079683 | 1079856 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 21 | 4655731 | 4655904 | + | NZ_AP022617.1 | Mycolicibacterium monacense |
| 22 | 4602781 | 4602954 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 23 | 190851 | 191024 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 24 | 4589170 | 4589343 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 25 | 379362 | 379535 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 26 | 4128426 | 4128599 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 27 | 262861 | 263034 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 28 | 1118182 | 1118355 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 29 | 273212 | 273385 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 30 | 3385129 | 3385302 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 31 | 309534 | 309707 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 32 | 281727 | 281900 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 33 | 92508 | 92681 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 34 | 5486092 | 5486265 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 35 | 4784449 | 4784622 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 36 | 628134 | 628307 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 37 | 278929 | 279102 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 38 | 1627208 | 1627381 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 39 | 1913490 | 1913663 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 40 | 567699 | 567872 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 41 | 2010399 | 2010572 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 42 | 4854918 | 4855091 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 43 | 2101192 | 2101365 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 44 | 4661877 | 4662050 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 45 | 4589318 | 4589491 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 46 | 1655279 | 1655452 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 47 | 1849043 | 1849216 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 48 | 4257047 | 4257220 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 49 | 1815635 | 1815808 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 50 | 3232153 | 3232326 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 51 | 1658376 | 1658549 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 52 | 3519517 | 3519690 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 53 | 1727367 | 1727540 | + | NZ_AP022562.1 | Mycobacterium novum |
| 54 | 230338 | 230511 | - | NC_015576.1 | Mycolicibacter sinensis |
| 55 | 3466103 | 3466276 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 56 | 320750 | 320923 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 57 | 3548702 | 3548875 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 58 | 2084997 | 2085170 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 59 | 248035 | 248208 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 60 | 1799422 | 1799595 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 61 | 665115 | 665288 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 62 | 2022305 | 2022478 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 63 | 4902479 | 4902652 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 64 | 1698943 | 1699116 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 65 | 218486 | 218659 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 66 | 4595930 | 4596103 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 67 | 3842248 | 3842421 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 68 | 2154914 | 2155087 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 69 | 2562239 | 2562412 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 70 | 3717111 | 3717284 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 71 | 5059578 | 5059751 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 72 | 5160703 | 5160876 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 73 | 2987520 | 2987693 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 74 | 4381361 | 4381534 | + | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 75 | 4237973 | 4238146 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 76 | 4604406 | 4604579 | + | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 77 | 4594977 | 4595150 | + | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 78 | 4552411 | 4552584 | + | NZ_CP014955.1 | Mycobacteroides abscessus |
| 79 | 5085832 | 5086005 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 80 | 7209106 | 7209279 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 81 | 898465 | 898638 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00440.25 | 0.89 | 72 | 1689.5 | opposite-strand | Bacterial regulatory proteins, tetR family |
| 2 | PF11847.10 | 1.0 | 81 | 56 | same-strand | Alpha-(1->3)-arabinofuranosyltransferase |
| 3 | PF00933.23 | 0.95 | 77 | 286 | opposite-strand | Glycosyl hydrolase family 3 N terminal domain |
| 4 | PF17932.3 | 0.67 | 54 | 1550.5 | opposite-strand | Tetracyclin repressor-like, C-terminal domain |
| 5 | PF17918.3 | 0.69 | 56 | 1550.5 | opposite-strand | Tetracyclin repressor-like, C-terminal domain |
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