Result : P9WKW1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein Rv0476 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 566508 |
| Right | 566771 |
| Strand | + |
| Nucleotide Sequence | ATGCTGGTATTGCTGGTCGCCGTCTTGGTGACAGCGGTGTACGCGTTTGTGCATGCTGCGTTGCAGCGGCCCGATGCCTATACCGCCGCCGACAAGCTGACCAAGCCGGTGTGGTTGGTGATCCTGGGCGCGGCCGTGGCGTTGGCCTCCATCCTGTATCCCGTTTTGGGTGTGCTCGGGATGGCGATGTCCGCCTGTGCGTCCGGCGTGTATCTGGTCGACGTGCGGCCCAAGCTTCTCGAGATTCAGGGCAAGTCGCGCTAA |
| Sequence | MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRPKLLEIQGKSR |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 9634230 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P9WKW1 |
| ORF Length (Amino Acid) | 87 |
++ More..
| Conservation Analysis |
No. of Species: 89
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 566508 | 566771 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 576786 | 577049 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 3532325 | 3532588 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 4 | 4005764 | 4006027 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 5 | 2433652 | 2433867 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 6 | 2376518 | 2376733 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 7 | 4946981 | 4947244 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 8 | 4741846 | 4742109 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 9 | 1402270 | 1402533 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 10 | 3235643 | 3235906 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 11 | 1014193 | 1014408 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 12 | 4422016 | 4422279 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 13 | 4603997 | 4604260 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 14 | 579693 | 579956 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 15 | 3705821 | 3706084 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 16 | 717645 | 717908 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 17 | 4638088 | 4638351 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 18 | 4771780 | 4772043 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 19 | 4899882 | 4900145 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 20 | 2909249 | 2909512 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 21 | 2854039 | 2854302 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 22 | 3219085 | 3219348 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 23 | 3908168 | 3908431 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 24 | 1896776 | 1897039 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 25 | 773327 | 773542 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 26 | 2460635 | 2460859 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 27 | 386101 | 386313 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 28 | 4293139 | 4293381 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 29 | 1651268 | 1651483 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 30 | 967561 | 967824 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 31 | 2317792 | 2318061 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 32 | 1474549 | 1474764 | - | NZ_AP022562.1 | Mycobacterium novum |
| 33 | 482484 | 482699 | + | NC_015576.1 | Mycolicibacter sinensis |
| 34 | 4810107 | 4810340 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 35 | 2433108 | 2433326 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 36 | 4942535 | 4942768 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 37 | 627207 | 627428 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 38 | 4246746 | 4246961 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 39 | 486790 | 487005 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 40 | 4926553 | 4926780 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 41 | 3021171 | 3021389 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 42 | 1174947 | 1175210 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 43 | 1587645 | 1587878 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 44 | 264553 | 264768 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 45 | 847024 | 847248 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 46 | 853187 | 853417 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 47 | 5144663 | 5144911 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 48 | 665341 | 665565 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 49 | 2828647 | 2828886 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 50 | 2055110 | 2055349 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 51 | 5349336 | 5349560 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 52 | 888730 | 888948 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 53 | 269706 | 269990 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 54 | 2839173 | 2839391 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 55 | 1216670 | 1216900 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 56 | 4199851 | 4200072 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 57 | 1038650 | 1038883 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 58 | 696103 | 696345 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 59 | 1038154 | 1038378 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 60 | 741933 | 742163 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 61 | 135121 | 135345 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 62 | 1991424 | 1991648 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 63 | 5937243 | 5937485 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 64 | 2236160 | 2236444 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 65 | 4941883 | 4942101 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 66 | 5127048 | 5127266 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 67 | 5039865 | 5040086 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 68 | 3929836 | 3930054 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 69 | 2345116 | 2345337 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 70 | 4237395 | 4237643 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 71 | 3906036 | 3906320 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 72 | 4189333 | 4189611 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 73 | 7239951 | 7240208 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 74 | 444352 | 444576 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 75 | 4248900 | 4249142 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 76 | 7250130 | 7250384 | - | NZ_AP023396.1 | Nocardia wallacei |
| 77 | 336271 | 336489 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 78 | 4189423 | 4189641 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 79 | 7805543 | 7805806 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 80 | 552649 | 552912 | - | NZ_AP017900.1 | Nocardia seriolae |
| 81 | 3667578 | 3667796 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 82 | 1650934 | 1651170 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 83 | 3839762 | 3839974 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 84 | 4194391 | 4194669 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 85 | 4666305 | 4666538 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 86 | 4133745 | 4133996 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 87 | 1015206 | 1015424 | - | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 88 | 5502658 | 5502915 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 89 | 3922232 | 3922444 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF19344.1 | 0.96 | 85 | 2833 | opposite-strand | Tetracyclin repressor-like, C-terminal domain |
| 2 | PF04286.14 | 0.97 | 86 | 1372.5 | same-strand | Protein of unknown function (DUF445) |
| 3 | PF01381.24 | 0.99 | 88 | 836 | same-strand | Helix-turn-helix |
| 4 | PF13560.8 | 0.99 | 88 | 833.5 | same-strand | Helix-turn-helix domain |
| 5 | PF12844.9 | 0.99 | 88 | 833.5 | same-strand | Helix-turn-helix domain |
| 6 | PF10783.11 | 0.88 | 78 | 5.0 | same-strand | Protein of unknown function (DUF2599) |
| 7 | PF01791.11 | 0.89 | 79 | 425 | same-strand | DeoC/LacD family aldolase |
| 8 | PF11209.10 | 0.85 | 76 | 1133.0 | opposite-strand | LmeA-like phospholipid-binding |
| 9 | PF00795.24 | 0.78 | 69 | 2155 | opposite-strand | Carbon-nitrogen hydrolase |
++ More..