Protein Information |
Information Type | Description |
---|---|
Protein name | Putative antitoxin VapB12 |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 1947416 |
Right | 1947643 |
Strand | - |
Nucleotide Sequence | ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGATGAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAGCGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA |
Sequence | MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE |
Source of smORF | Swiss-Prot |
Function | Putative antitoxin component of a possible type II toxin-antitoxin (TA) system. The cognate toxin is VapC12. {ECO:0000305|Pubmed:15718296}. |
Pubmed ID | 9634230 15718296 21969609 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | P9WJ53 |
ORF Length (Amino Acid) | 75 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1947416 | 1947643 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 1008236 | 1008463 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
3 | 1746039 | 1746266 | - | NZ_AP022581.1 | Mycobacterium lacus |
4 | 4997489 | 4997716 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01850.23 | 1.0 | 4 | -3 | same-strand | PIN domain |