Protein Information |
Information Type | Description |
---|---|
Protein name | Putative antitoxin VapB13 |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 2087649 |
Right | 2087912 |
Strand | - |
Nucleotide Sequence | ATGAGTAAGCGCCTGCAGGTTCTGCTGGACCCCGACGAGTGGGAAGAACTCCGAGAGATTGCACGCCGGCACCGCACGACAGTGTCCGAGTGGGTCCGCCGGACGCTGCGGGAGGCGCGGGAGCGAGAACCGCGCGGCGATCTAGACATGAAGCTGCGATCTGTCCGTGCCGCCGCACGCCATGAGTTCCCGACAGCCGACGTCGAGCAGATGCTCGAGGAAATCGAACGCGGACGCGGTGCGGAGCGCGAAGGATCACGGTGA |
Sequence | MSKRLQVLLDPDEWEELREIARRHRTTVSEWVRRTLREAREREPRGDLDMKLRSVRAAARHEFPTADVEQMLEEIERGRGAEREGSR |
Source of smORF | Swiss-Prot |
Function | Putative antitoxin component of a possible type II toxin-antitoxin (TA) system. The cognate toxin is VapC13. {ECO:0000305|Pubmed:15718296}. |
Pubmed ID | 9634230 15718296 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | P9WJ51 |
ORF Length (Amino Acid) | 87 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2087649 | 2087912 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 2126168 | 2126431 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
3 | 2520697 | 2520960 | - | NZ_AP022581.1 | Mycobacterium lacus |
4 | 1093336 | 1093599 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
5 | 3518897 | 3519160 | + | NZ_AP022606.1 | Mycobacterium branderi |
6 | 3591429 | 3591692 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
7 | 896564 | 896821 | - | NZ_CP015136.1 | Luteitalea pratensis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01850.23 | 1.0 | 7 | -3 | same-strand | PIN domain |