Result : P9WJ51
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative antitoxin VapB13 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 2087649 |
| Right | 2087912 |
| Strand | - |
| Nucleotide Sequence | ATGAGTAAGCGCCTGCAGGTTCTGCTGGACCCCGACGAGTGGGAAGAACTCCGAGAGATTGCACGCCGGCACCGCACGACAGTGTCCGAGTGGGTCCGCCGGACGCTGCGGGAGGCGCGGGAGCGAGAACCGCGCGGCGATCTAGACATGAAGCTGCGATCTGTCCGTGCCGCCGCACGCCATGAGTTCCCGACAGCCGACGTCGAGCAGATGCTCGAGGAAATCGAACGCGGACGCGGTGCGGAGCGCGAAGGATCACGGTGA |
| Sequence | MSKRLQVLLDPDEWEELREIARRHRTTVSEWVRRTLREAREREPRGDLDMKLRSVRAAARHEFPTADVEQMLEEIERGRGAEREGSR |
| Source of smORF | Swiss-Prot |
| Function | Putative antitoxin component of a possible type II toxin-antitoxin (TA) system. The cognate toxin is VapC13. {ECO:0000305|Pubmed:15718296}. |
| Pubmed ID | 9634230 15718296 |
| Domain | |
| Functional Category | Antitoxin_type_2 |
| Uniprot ID | P9WJ51 |
| ORF Length (Amino Acid) | 87 |
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| Conservation Analysis |
No. of Species: 7
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2087649 | 2087912 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 2126168 | 2126431 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 2520697 | 2520960 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 4 | 1093336 | 1093599 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 5 | 3518897 | 3519160 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 6 | 3591429 | 3591692 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 7 | 896564 | 896821 | - | NZ_CP015136.1 | Luteitalea pratensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01850.23 | 1.0 | 7 | -3 | same-strand | PIN domain |
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