Protein Information |
Information Type | Description |
---|---|
Protein name | Putative antitoxin VapB17 |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 2851091 |
Right | 2851318 |
Strand | + |
Nucleotide Sequence | ATGACCGTAAAGAGGACCACGATTGAGCTGGACGAAGATCTTGTGCGGGCAGCCCAGGCCGTCACCGGGGAAACATTGCGAGCGACGGTCGAGCGCGCGCTGCAGCAGCTGGTGGCCGCGGCTGCCGAGCAGGCCGCCGCGCGCCGGCGGCGGATCGTCGACCATCTCGCGCACGCCGGCACTCACGTGGACGCAGACGTGCTGCTCTCCGAGCAGGCGTGGCGATGA |
Sequence | MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAWR |
Source of smORF | Swiss-Prot |
Function | Putative antitoxin component of a possible type II toxin-antitoxin (TA) system. The cognate toxin is VapC17. {ECO:0000305|Pubmed:15718296}. |
Pubmed ID | 9634230 15718296 21969609 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | P9WJ49 |
ORF Length (Amino Acid) | 75 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2851091 | 2851318 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 2920183 | 2920410 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
3 | 2085628 | 2085813 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
4 | 2247651 | 2247878 | - | NZ_AP022562.1 | Mycobacterium novum |
5 | 4365820 | 4366047 | + | NC_015576.1 | Mycolicibacter sinensis |
6 | 1379341 | 1379568 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
7 | 930885 | 931070 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
8 | 4777617 | 4777844 | + | NC_015635.1 | Microlunatus phosphovorus NM-1 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01850.23 | 0.75 | 6 | 2949 | same-strand | PIN domain |