* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01850.23
|
1.0
|
2
|
882.0
|
opposite-strand
|
PIN domain
|
2
|
PF01402.23
|
1.0
|
2
|
1256.0
|
opposite-strand
|
Ribbon-helix-helix protein, copG family
|
3
|
PF01478.20
|
1.0
|
2
|
411.0
|
same-strand
|
Type IV leader peptidase family
|
4
|
PF08501.13
|
1.0
|
2
|
842.0
|
same-strand
|
Shikimate dehydrogenase substrate binding domain
|
5
|
PF18317.3
|
1.0
|
2
|
842.0
|
same-strand
|
Shikimate 5'-dehydrogenase C-terminal domain
|
6
|
PF02618.18
|
1.0
|
2
|
1648.0
|
same-strand
|
YceG-like family
|
7
|
PF03652.17
|
1.0
|
2
|
2894.0
|
same-strand
|
Holliday junction resolvase
|
8
|
PF01411.21
|
1.0
|
2
|
3407.0
|
same-strand
|
tRNA synthetases class II (A)
|
9
|
PF02272.21
|
1.0
|
2
|
3407.0
|
same-strand
|
DHHA1 domain
|
10
|
PF07973.16
|
1.0
|
2
|
3407.0
|
same-strand
|
Threonyl and Alanyl tRNA synthetase second additional domain
|
++ More..