Result : P9WJ39
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Antitoxin VapB28 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 703244 |
| Right | 703489 |
| Strand | + |
| Nucleotide Sequence | ATGGCGTTGAACATCAAAGATCCGTCGGTTCACCAGGCGGTCAAGCAGATCGCGAAAATCACCGGCGAATCTCAGGCTCGGGCGGTGGCGACCGCGGTGAACGAGCGTCTGGCCAGACTGCGCAGCGACGATCTCGCCGCCCGGCTCTTGGCTATCGGCCACAAGACCGCGAGCAGGATGAGCCCGGAAGCAAAGCGCCTCGACCACGATGCTCTGCTGTATGACGAGCGAGGGCTGCCGGCGTGA |
| Sequence | MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRMSPEAKRLDHDALLYDERGLPA |
| Source of smORF | Swiss-Prot |
| Function | Antitoxin component of a type II toxin-antitoxin (TA) system. Upon expression in M.smegmatis neutralizes the effect of cognate toxin VapC28. {ECO:0000269|Pubmed:20011113}. |
| Pubmed ID | 9634230 20011113 21969609 |
| Domain | CDD:413087 |
| Functional Category | Antitoxin_type_2 |
| Uniprot ID | P9WJ39 |
| ORF Length (Amino Acid) | 81 |
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| Conservation Analysis |
No. of Species: 7
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 703244 | 703489 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 715006 | 715251 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 4380321 | 4380566 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 4 | 2623609 | 2623854 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 5 | 1243951 | 1244196 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 6 | 2404794 | 2405036 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 7 | 1342010 | 1342270 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01850.23 | 0.86 | 6 | -3 | same-strand | PIN domain |
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