Protein Information |
Information Type | Description |
---|---|
Protein name | Putative antitoxin VapB29 |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 710782 |
Right | 711009 |
Strand | + |
Nucleotide Sequence | GTGCGCACTACCATCGACCTGCCGCAAGACCTGCACAAGCAGGCACTGGCGATTGCCCGGGATACGCACCGCACGTTGAGTGAAACGGTCGCCGACCTCATGCGACGAGGCCTGGCCGCCAACCGCCCTACCGCGTTGTCCTCAGACCCCAGAACGGGATTGCCTTTGGTGAGCGTCGGGACCGTCGTGACCTCCGAGGACGTGCGTTCATTAGAGGACGAGCAGTGA |
Sequence | MRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSVGTVVTSEDVRSLEDEQ |
Source of smORF | Swiss-Prot |
Function | Possibly the antitoxic component of a type II toxin-antitoxin (TA) system. Its cognate toxin is VapC29. {ECO:0000305|Pubmed:20011113}. |
Pubmed ID | 9634230 20011113 21969609 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | P9WJ37 |
ORF Length (Amino Acid) | 75 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 710782 | 711009 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 722544 | 722771 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
3 | 3088017 | 3088244 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
4 | 4074320 | 4074547 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
5 | 1287759 | 1287974 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
6 | 4212462 | 4212689 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
7 | 1126318 | 1126545 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
8 | 3550336 | 3550566 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
9 | 2934891 | 2935121 | - | NZ_CP047156.1 | Epidermidibacterium keratini |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01850.23 | 0.89 | 8 | -3 | same-strand | PIN domain |