Result : P9WJ32
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Antitoxin VapB32 |
| NCBI Accession ID | AE000516.2 |
| Organism | Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) |
| Left | 1238964 |
| Right | 1239161 |
| Strand | + |
| Nucleotide Sequence | ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCTCCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAGCTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA |
| Sequence | MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR |
| Source of smORF | Swiss-Prot |
| Function | Antitoxin component of a type II toxin-antitoxin (TA) system. {ECO:0000250}. |
| Pubmed ID | 12218036 |
| Domain | CDD:421349 |
| Functional Category | Antitoxin_type_2 |
| Uniprot ID | P9WJ32 |
| ORF Length (Amino Acid) | 65 |
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| Conservation Analysis |
No. of Species: 93
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1239416 | 1239613 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 1257584 | 1257781 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 2850786 | 2850983 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 4 | 2836183 | 2836380 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 5 | 1117699 | 1117905 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 6 | 1148769 | 1148975 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 7 | 1139979 | 1140185 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 8 | 2812701 | 2812898 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 9 | 716809 | 717006 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 10 | 345269 | 345463 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 11 | 2759668 | 2759874 | - | NZ_LR134406.1 | Arachnia propionica |
| 12 | 1261346 | 1261525 | - | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 13 | 1459873 | 1460064 | + | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 14 | 2331863 | 2332060 | + | NZ_CP066060.1 | Actinomyces oris |
| 15 | 1459208 | 1459405 | - | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 16 | 201860 | 202057 | - | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 17 | 728912 | 729109 | + | NC_018025.1 | Desulfomonile tiedjei DSM 6799 |
| 18 | 1858319 | 1858528 | + | NZ_LR134363.1 | Actinomyces slackii |
| 19 | 1576280 | 1576474 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 20 | 807182 | 807391 | + | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 21 | 1892368 | 1892559 | - | NZ_LR134479.1 | Rothia aeria |
| 22 | 239929 | 240129 | - | NZ_CP053858.1 | Rhizobium pusense |
| 23 | 363104 | 363304 | + | NZ_CP035001.1 | Rhizobium acidisoli |
| 24 | 708833 | 709030 | + | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 25 | 1945409 | 1945606 | - | NZ_CP030126.1 | Indioceanicola profundi |
| 26 | 2064369 | 2064563 | - | NZ_CP013341.1 | Nitrosomonas ureae |
| 27 | 3085868 | 3086068 | - | NZ_CP025682.1 | Azoarcus pumilus |
| 28 | 355418 | 355615 | - | NC_007511.1 | Burkholderia lata |
| 29 | 645298 | 645495 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 30 | 1869606 | 1869806 | + | NZ_CP064062.1 | Brucella anthropi |
| 31 | 1143702 | 1143902 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 32 | 681574 | 681771 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 33 | 1463499 | 1463699 | + | NZ_CP023068.1 | Ensifer sojae CCBAU 05684 |
| 34 | 1189440 | 1189634 | - | NZ_CP066065.1 | Schaalia meyeri |
| 35 | 444998 | 445198 | + | NZ_CP022605.1 | [Ochrobactrum] quorumnocens |
| 36 | 4515732 | 4515929 | - | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 37 | 4650066 | 4650263 | - | NZ_CP017147.1 | Bosea vaviloviae |
| 38 | 614668 | 614862 | - | NZ_CP029452.1 | Sinorhizobium fredii CCBAU 25509 |
| 39 | 15295 | 15495 | - | NC_006823.1 | Aromatoleum aromaticum EbN1 |
| 40 | 2936216 | 2936413 | + | NC_014006.1 | Sphingobium japonicum UT26S |
| 41 | 408022 | 408219 | - | NZ_CP046910.1 | Paraburkholderia acidiphila |
| 42 | 2460654 | 2460851 | + | NZ_CP016616.1 | Microvirga ossetica |
| 43 | 6435320 | 6435511 | + | NZ_CP063849.1 | Paludibaculum fermentans |
| 44 | 5030691 | 5030888 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 45 | 2910196 | 2910387 | - | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 46 | 2309127 | 2309324 | + | NZ_CP062804.1 | Cupriavidus basilensis |
| 47 | 2202052 | 2202252 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 48 | 1585182 | 1585373 | + | NZ_CP049934.1 | Leucobacter insecticola |
| 49 | 2649583 | 2649780 | + | NZ_CP013461.1 | Burkholderia stagnalis |
| 50 | 35431 | 35628 | - | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 51 | 534997 | 535194 | + | NZ_CP021359.1 | Acidovorax carolinensis |
| 52 | 1054584 | 1054781 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 53 | 1431846 | 1432046 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 54 | 571272 | 571469 | - | NZ_CP011518.2 | Pandoraea oxalativorans |
| 55 | 2320284 | 2320481 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 56 | 2316679 | 2316876 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 57 | 1230911 | 1231108 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 58 | 1371572 | 1371769 | - | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 59 | 2434476 | 2434670 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 60 | 221907 | 222116 | + | NC_018691.1 | Alcanivorax dieselolei B5 |
| 61 | 2412917 | 2413111 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 62 | 182020 | 182217 | - | NZ_CP011808.2 | Pandoraea faecigallinarum |
| 63 | 4711666 | 4711866 | - | NC_022600.1 | Gloeobacter kilaueensis JS1 |
| 64 | 99545 | 99742 | - | NZ_CP062806.1 | Cupriavidus basilensis |
| 65 | 3197134 | 3197334 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 66 | 4732136 | 4732342 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 67 | 2785516 | 2785719 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 68 | 1980978 | 1981175 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 69 | 1362837 | 1363043 | - | NZ_CP039288.1 | Cupriavidus necator H16 |
| 70 | 552979 | 553185 | + | NZ_CP046914.1 | Paraburkholderia acidisoli |
| 71 | 471818 | 472009 | + | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 72 | 3595406 | 3595618 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 73 | 1949400 | 1949597 | + | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 74 | 1331521 | 1331724 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 75 | 1183986 | 1184189 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 76 | 2962759 | 2962962 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 77 | 6021593 | 6021790 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 78 | 23310 | 23516 | - | NZ_AP021882.1 | Sulfuriferula nivalis |
| 79 | 912225 | 912428 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 80 | 3734 | 3928 | + | NZ_CP048880.1 | Spartinivicinus ruber |
| 81 | 3582402 | 3582611 | + | NZ_LR134302.1 | Achromobacter spanius |
| 82 | 3588975 | 3589172 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 83 | 228967 | 229161 | - | NC_019675.1 | Cyanobium gracile PCC 6307 |
| 84 | 3303192 | 3303395 | + | NZ_CP019038.1 | Massilia putida |
| 85 | 594203 | 594415 | + | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 86 | 5384317 | 5384520 | - | NZ_CP047650.1 | Xylophilus rhododendri |
| 87 | 259054 | 259263 | + | NC_017964.1 | Advenella kashmirensis WT001 |
| 88 | 677700 | 677906 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 89 | 828278 | 828484 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 90 | 4134039 | 4134248 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 91 | 1839521 | 1839715 | + | NC_018014.1 | Terriglobus roseus DSM 18391 |
| 92 | 1962508 | 1962696 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 93 | 3247005 | 3247202 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 94 | 7297099 | 7297299 | - | NZ_CP015136.1 | Luteitalea pratensis |
| 95 | 4143368 | 4143574 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 96 | 19119 | 19325 | + | NZ_CP013415.1 | Burkholderia ubonensis |
| 97 | 543097 | 543303 | + | NZ_CP011505.1 | Burkholderia pyrrocinia |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01850.23 | 0.73 | 68 | -3.0 | same-strand | PIN domain |
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