* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13785.8
|
0.67
|
2
|
3095.0
|
same-strand
|
Domain of unknown function (DUF4178)
|
2
|
PF10936.10
|
0.67
|
2
|
2590.0
|
same-strand
|
Protein of unknown function DUF2617
|
3
|
PF14042.8
|
0.67
|
2
|
2162.0
|
same-strand
|
Domain of unknown function (DUF4247)
|
4
|
PF03994.16
|
0.67
|
2
|
1679.0
|
same-strand
|
Domain of Unknown Function (DUF350)
|
5
|
PF01564.19
|
0.67
|
2
|
111.0
|
same-strand
|
Spermine/spermidine synthase domain
|
6
|
PF13649.8
|
0.67
|
2
|
111.0
|
same-strand
|
Methyltransferase domain
|
7
|
PF01850.23
|
1.0
|
3
|
-13
|
same-strand
|
PIN domain
|
8
|
PF01709.22
|
0.67
|
2
|
448.0
|
opposite-strand
|
Transcriptional regulator
|
9
|
PF01174.21
|
0.67
|
2
|
1336.0
|
opposite-strand
|
SNO glutamine amidotransferase family
|
10
|
PF02551.17
|
0.67
|
2
|
1940.0
|
opposite-strand
|
Acyl-CoA thioesterase
|
11
|
PF13622.8
|
0.67
|
2
|
1940.0
|
opposite-strand
|
Thioesterase-like superfamily
|
12
|
PF01680.19
|
0.67
|
2
|
2814.0
|
opposite-strand
|
SOR/SNZ family
|
++ More..