* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP022575.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01944.19
|
0.8
|
4
|
3480.5
|
same-strand
|
Stage II sporulation protein M
|
2
|
PF06271.14
|
0.8
|
4
|
2453.5
|
opposite-strand
|
RDD family
|
3
|
PF00370.23
|
1.0
|
5
|
484
|
same-strand
|
FGGY family of carbohydrate kinases, N-terminal domain
|
4
|
PF02782.18
|
1.0
|
5
|
484
|
same-strand
|
FGGY family of carbohydrate kinases, C-terminal domain
|
5
|
PF01850.23
|
1.0
|
5
|
-3.0
|
same-strand
|
PIN domain
|
6
|
PF13649.8
|
1.0
|
5
|
1581
|
opposite-strand
|
Methyltransferase domain
|
7
|
PF08241.14
|
0.8
|
4
|
1573.5
|
opposite-strand
|
Methyltransferase domain
|
8
|
PF08242.14
|
0.8
|
4
|
1573.5
|
opposite-strand
|
Methyltransferase domain
|
9
|
PF00266.21
|
0.8
|
4
|
2285.0
|
same-strand
|
Aminotransferase class-V
|
10
|
PF10017.11
|
0.8
|
4
|
3460.5
|
same-strand
|
Histidine-specific methyltransferase, SAM-dependent
|
11
|
PF03551.16
|
0.6
|
3
|
2034
|
opposite-strand
|
Transcriptional regulator PadR-like family
|
++ More..