Result : P9WIJ6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Antitoxin ParD1 |
| NCBI Accession ID | AE000516.2 |
| Organism | Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) |
| Left | 2201306 |
| Right | 2201557 |
| Strand | - |
| Nucleotide Sequence | GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCGGTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTCTCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCGCGTGGCCGGTGA |
| Sequence | MGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADASRGR |
| Source of smORF | Swiss-Prot |
| Function | Antitoxin component of a type II toxin-antitoxin (TA) system. {ECO:0000250}. |
| Pubmed ID | 12218036 |
| Domain | CDD:419885,CDD:425357 |
| Functional Category | Antitoxin_type_2 |
| Uniprot ID | P9WIJ6 |
| ORF Length (Amino Acid) | 83 |
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| Conservation Analysis |
No. of Species: 77
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2203974 | 2204225 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 2247984 | 2248235 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 4481356 | 4481607 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 4 | 2118058 | 2118309 | - | NZ_AP022562.1 | Mycobacterium novum |
| 5 | 4492522 | 4492773 | + | NC_015576.1 | Mycolicibacter sinensis |
| 6 | 90551 | 90802 | - | NC_022654.1 | Mycobacterium kansasii ATCC 12478 |
| 7 | 2148676 | 2148933 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 8 | 1851484 | 1851735 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 9 | 4749089 | 4749340 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 10 | 3557935 | 3558186 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 11 | 4492259 | 4492507 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 12 | 2701998 | 2702249 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 13 | 3804718 | 3804969 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 14 | 179754 | 180002 | - | NZ_CP054025.1 | Rhizobium indicum |
| 15 | 253782 | 254033 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 16 | 1339813 | 1340064 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 17 | 158300 | 158533 | - | NZ_CP049934.1 | Leucobacter insecticola |
| 18 | 421160 | 421408 | - | NZ_CP071681.1 | Rhizobium ruizarguesonis |
| 19 | 185478 | 185720 | + | NZ_CP017565.1 | Paraburkholderia sprentiae WSM5005 |
| 20 | 1355437 | 1355682 | + | NZ_CP009831.1 | Burkholderia multivorans ATCC BAA-247 |
| 21 | 1858258 | 1858503 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 22 | 2016638 | 2016871 | - | NZ_CP060789.1 | Tessaracoccus defluvii |
| 23 | 3097607 | 3097852 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 24 | 771505 | 771750 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 25 | 452006 | 452251 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 26 | 301213 | 301485 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 27 | 816776 | 817018 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 28 | 2749911 | 2750144 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 29 | 1481071 | 1481307 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 30 | 2171249 | 2171482 | + | NZ_CP035806.1 | Leucobacter triazinivorans |
| 31 | 1228105 | 1228350 | - | NZ_AP019700.1 | Stella humosa |
| 32 | 954138 | 954383 | - | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 33 | 1026651 | 1026896 | - | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 34 | 480685 | 480927 | + | NZ_CP035689.1 | Vibrio metoecus |
| 35 | 1719204 | 1719449 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 36 | 3739451 | 3739702 | + | NZ_CP027850.1 | Caulobacter segnis |
| 37 | 294172 | 294417 | - | NZ_CP045073.1 | Paracoccus kondratievae |
| 38 | 696632 | 696877 | - | NZ_CP045072.1 | Paracoccus kondratievae |
| 39 | 549934 | 550179 | + | NZ_CP017147.1 | Bosea vaviloviae |
| 40 | 5133 | 5381 | - | NZ_AP014570.1 | Serpentinomonas mccroryi |
| 41 | 2421469 | 2421711 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 42 | 44160 | 44405 | - | NZ_CP035902.1 | Burkholderia glumae |
| 43 | 347919 | 348161 | - | NZ_AP014525.1 | Vibrio cholerae MS6 |
| 44 | 3466944 | 3467186 | + | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 45 | 1465490 | 1465735 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 46 | 2659286 | 2659531 | - | NZ_CP014056.2 | Grimontia hollisae |
| 47 | 1235645 | 1235878 | + | NZ_AP017369.1 | Corynebacterium suranareeae |
| 48 | 1867303 | 1867545 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 49 | 703174 | 703416 | + | NZ_CP022742.1 | Vibrio qinghaiensis |
| 50 | 701552 | 701794 | + | NZ_CP022742.1 | Vibrio qinghaiensis |
| 51 | 1749691 | 1749948 | + | NZ_CP024422.1 | Paracoccus yeei |
| 52 | 777103 | 777345 | - | NZ_AP014636.1 | Vibrio tritonius |
| 53 | 1250585 | 1250827 | + | NZ_CP009355.1 | Vibrio tubiashii ATCC 19109 |
| 54 | 2256955 | 2257212 | - | NZ_CP026100.1 | Caulobacter flavus |
| 55 | 1811327 | 1811569 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 56 | 1859382 | 1859624 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 57 | 483470 | 483712 | - | NZ_CP061081.1 | Marinomonas arctica |
| 58 | 1582199 | 1582441 | - | NC_011753.2 | Vibrio atlanticus |
| 59 | 628934 | 629176 | + | NZ_CP008849.1 | Alteromonas australica |
| 60 | 3612165 | 3612404 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 61 | 2321167 | 2321418 | + | NZ_CP060723.1 | Pedobacter roseus |
| 62 | 2446360 | 2446602 | + | NZ_CP019288.1 | Kordia antarctica |
| 63 | 2506647 | 2506889 | + | NC_008571.1 | Gramella forsetii KT0803 |
| 64 | 1112361 | 1112603 | - | NZ_CP060092.1 | Teredinibacter purpureus |
| 65 | 994996 | 995262 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 66 | 4614786 | 4615028 | + | NC_015844.1 | Zobellia galactanivorans |
| 67 | 12387 | 12626 | - | NZ_CP027860.1 | Ahniella affigens |
| 68 | 296679 | 296921 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 69 | 535478 | 535711 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 70 | 4313008 | 4313250 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
| 71 | 2772737 | 2772979 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 72 | 1457067 | 1457321 | - | NZ_CP022111.1 | Nitrospirillum amazonense CBAmc |
| 73 | 2757408 | 2757650 | - | NZ_CP017478.1 | Urechidicola croceus |
| 74 | 2566487 | 2566723 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 75 | 1335305 | 1335553 | - | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 76 | 501048 | 501290 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 77 | 600790 | 601032 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 78 | 3082502 | 3082744 | + | NZ_CP020822.1 | Tenacibaculum maritimum |
| 79 | 1117674 | 1117916 | + | NZ_CP025938.1 | Tamlana carrageenivorans |
| 80 | 1596480 | 1596725 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05016.17 | 0.74 | 57 | -3.0 | same-strand | ParE toxin of type II toxin-antitoxin system, parDE |
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