ProsmORF-pred
Result : P9WHA9
Protein Information
Information Type Description
Protein name 50S ribosomal protein L28-2
NCBI Accession ID AL123456.3
Organism Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Left 2314825
Right 2315061
Strand -
Nucleotide Sequence TTGTCCGCCCACTGCCAAGTCACCGGCCGCAAGCCGGGATTTGGAAACACCGTCTCGCACTCCCATCGCCGAAGCCGTCGGCGATGGTCGCCCAACATTCAGCAACGAACGTATTACCTGCCCTCCGAGGGCCGTCGCATTCGGCTGCGGGTGTCCACGAAGGGTATAAAGGTCATCGACCGCGACGGTATCGAAGCGGTCGTGGCCCGCCTGCGTCGCCAGGGGCAGCGGATCTGA
Sequence MSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVIDRDGIEAVVARLRRQGQRI
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID 9634230
Domain CDD:412338
Functional Category Ribosomal_protein
Uniprot ID P9WHA9
ORF Length (Amino Acid) 78
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 457
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2314825 2315061 - NC_000962.3 Mycobacterium tuberculosis H37Rv
2 2364557 2364793 - NC_015848.1 Mycobacterium canettii CIPT 140010059
3 5535943 5536179 - NZ_CP011269.1 Mycolicibacterium fortuitum
4 3761585 3761821 + NZ_AP022614.1 Mycobacterium parmense
5 5863803 5864039 + NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
6 1199961 1200197 - NZ_AP022596.1 Mycolicibacterium helvum
7 581305 581541 - NZ_AP022579.1 Mycolicibacterium boenickei
8 4808991 4809227 + NZ_CP009360.4 Mycobacterium avium subsp. hominissuis
9 4593027 4593263 - NZ_AP022561.1 Mycolicibacterium aichiense
10 3228337 3228573 + NZ_AP022577.1 Mycolicibacterium aubagnense
11 2706073 2706309 - NZ_AP022615.1 Mycobacterium heidelbergense
12 6139270 6139506 - NZ_LN831039.1 Mycolicibacterium smegmatis
13 4343600 4343836 + NZ_AP022565.1 Mycolicibacterium alvei
14 3988561 3988797 - NZ_AP022616.1 Mycolicibacterium phocaicum
15 2240743 2240979 + NZ_CP012150.1 Mycobacterium goodii
16 4853054 4853290 + NZ_CP023147.1 Mycobacterium marseillense
17 2935887 2936123 - NZ_AP022620.1 Mycolicibacterium anyangense
18 1413990 1414226 + NZ_AP022618.1 Mycolicibacterium insubricum
19 2067932 2068168 - NZ_AP022600.1 Mycolicibacterium tokaiense
20 6952185 6952421 + NZ_AP023396.1 Nocardia wallacei
21 3445747 3445983 + NZ_AP022576.1 Mycobacterium florentinum
22 5114224 5114460 + NC_016948.1 Mycobacterium paraintracellulare
23 3635238 3635474 + NZ_AP022595.1 Mycolicibacterium sarraceniae
24 794308 794544 - NZ_AP022588.1 Mycolicibacterium sediminis
25 2431220 2431456 + NZ_CP015449.1 Dietzia lutea
26 6802192 6802428 + NZ_LR134352.1 Nocardia asteroides
27 5873125 5873361 + NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
28 5011051 5011287 + NC_016946.1 Mycobacterium intracellulare ATCC 13950
29 6385487 6385723 + NZ_CP018082.1 Nocardia mangyaensis
30 116920 117156 + NZ_AP022570.1 Mycolicibacterium poriferae
31 5189418 5189654 + NC_006361.1 Nocardia farcinica IFM 10152
32 2460789 2461025 + NZ_CP015961.1 Dietzia timorensis
33 1250520 1250756 - NZ_AP022610.1 Mycolicibacterium madagascariense
34 280498 280734 - NZ_CP024633.1 Mycobacteroides salmoniphilum
35 2619380 2619616 + NZ_CP015453.1 Dietzia psychralcaliphila
36 4020476 4020712 + NZ_AP022593.1 Mycolicibacterium arabiense
37 3781995 3782231 + NZ_AP022587.1 Mycobacterium stomatepiae
38 48566 48802 + NZ_LR134355.1 Mycolicibacterium chitae
39 502818 503054 + NZ_CP009312.1 Lawsonella clevelandensis
40 315772 316008 - NZ_CP014955.1 Mycobacteroides abscessus
41 1983221 1983457 - NZ_AP022598.1 Mycolicibacterium parafortuitum
42 291691 291927 - NZ_CP010271.1 Mycobacteroides saopaulense
43 7254667 7254903 + NZ_AP017900.1 Nocardia seriolae
44 1371698 1371934 + NZ_CP069485.1 Corynebacterium glucuronolyticum
45 2665532 2665768 - NZ_CP026746.1 Nocardia cyriacigeorgica
46 285907 286143 - NZ_AP018165.1 [Mycobacterium] stephanolepidis
47 430157 430393 - NZ_CP011530.1 Mycobacteroides immunogenum
48 4623122 4623358 + NZ_AP023172.1 Rhodococcus qingshengii
49 319615 319851 - NZ_CP007220.1 Mycobacteroides chelonae CCUG 47445
50 909514 909750 - NZ_CP015622.1 Corynebacterium crudilactis
51 1081451 1081687 - NZ_AP017369.1 Corynebacterium suranareeae
52 1647113 1647349 + NZ_CP046883.1 Corynebacterium anserum
53 7569563 7569799 - NZ_CP022088.2 Nocardia brasiliensis
54 1383803 1384039 - NZ_CP027793.1 Rhodococcus hoagii
55 330038 330274 - NZ_CP041695.1 Nocardia otitidiscaviarum
56 4944575 4944811 - NZ_AP022563.1 Mycolicibacterium duvalii
57 909386 909622 - NZ_LS483459.1 Corynebacterium jeikeium
58 1991276 1991512 + NC_015673.1 Corynebacterium resistens DSM 45100
59 897753 897989 - NZ_CP009220.1 Corynebacterium deserti GIMN1.010
60 4092055 4092291 - NZ_AP022573.1 Mycobacterium saskatchewanense
61 3136806 3137042 - NZ_CP042429.1 Corynebacterium nuruki S6-4
62 596092 596328 - NZ_CP048813.1 Rhodococcus triatomae
63 1924087 1924323 + NC_021663.1 Corynebacterium terpenotabidum Y-11
64 5066604 5066840 + NZ_AP022586.1 Mycolicibacterium litorale
65 891187 891423 - NC_020506.1 Corynebacterium callunae DSM 20147
66 1056467 1056703 - NZ_CP006842.1 Corynebacterium glyciniphilum AJ 3170
67 1205265 1205501 - NZ_CP029146.1 Rhodococcus ruber
68 2648080 2648316 + NZ_AP022589.1 Mycolicibacter minnesotensis
69 5496284 5496520 + NZ_LR134356.1 Mycolicibacterium aurum
70 1033767 1034003 - NZ_CP011542.1 Corynebacterium mustelae
71 1054199 1054435 - NZ_CP043474.1 Mycobacterium grossiae
72 3450593 3450829 + NZ_AP022567.1 Mycolicibacterium mageritense
73 1197968 1198204 - NZ_CP012752.1 Kibdelosporangium phytohabitans
74 2405633 2405869 + NZ_AP022568.1 Mycobacterium simiae
75 1650544 1650780 + NZ_CP033898.1 Corynebacterium pseudopelargi
76 1651171 1651407 + NZ_CP035299.1 Corynebacterium pelargi
77 832767 833003 - NZ_CP033896.1 Corynebacterium choanae
78 2239094 2239330 - NZ_LT906443.1 Corynebacterium ulcerans
79 1230935 1231171 - NC_014168.1 Segniliparus rotundus DSM 44985
80 3642474 3642710 + NC_015564.1 Hoyosella subflava DQS3-9A1
81 1557615 1557851 - NZ_LS483464.1 Corynebacterium renale
82 732834 733070 - NZ_CP033897.1 Corynebacterium gerontici
83 585930 586166 - NC_012704.1 Corynebacterium kroppenstedtii DSM 44385
84 696021 696257 - NC_017301.2 Corynebacterium pseudotuberculosis C231
85 3931114 3931350 - NZ_AP022601.1 Mycobacterium gallinarum
86 908474 908710 + NZ_CP020809.1 Mycobacterium dioxanotrophicus
87 787158 787394 - NZ_LR738855.1 Corynebacterium rouxii
88 745408 745644 - NZ_LN831026.1 Corynebacterium diphtheriae
89 884244 884480 - NZ_CP009246.1 Corynebacterium flavescens
90 871874 872110 - NZ_CP009245.1 Corynebacterium aquilae DSM 44791
91 218465 218701 - NZ_AP018164.1 Mycobacterium shigaense
92 2044497 2044733 + NZ_LR698967.1 Corynebacterium ammoniagenes
93 1942807 1943043 + NZ_CP009249.1 Corynebacterium phocae
94 1873139 1873375 + NZ_CP067012.1 Corynebacterium kefirresidentii
95 694191 694427 + NZ_CP014635.1 Corynebacterium simulans
96 1004942 1005178 - NC_004369.1 Corynebacterium efficiens YS-314
97 1972481 1972717 + NZ_CP009251.1 Corynebacterium stationis
98 701370 701606 - NZ_CP008944.1 Corynebacterium atypicum
99 925635 925871 - NC_020302.1 Corynebacterium halotolerans YIM 70093 = DSM 44683
100 802402 802638 - NZ_CP039247.1 Corynebacterium endometrii
101 901311 901547 - NC_012590.1 Corynebacterium aurimucosum ATCC 700975
102 2201727 2201963 - NZ_AP022603.1 Mycolicibacterium fallax
103 5619433 5619669 + NZ_AP022617.1 Mycolicibacterium monacense
104 2032196 2032432 - NZ_CP068161.1 Corynebacterium propinquum
105 954994 955230 - NZ_CP010827.1 Corynebacterium singulare
106 1831120 1831356 + NZ_LS483460.1 Corynebacterium minutissimum
107 790774 791010 - NZ_CP011311.1 Corynebacterium camporealensis
108 812317 812553 - NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800
109 973348 973584 - NZ_CP004353.1 Corynebacterium vitaeruminis DSM 20294
110 2623637 2623873 - NZ_LS483468.1 Rhodococcus coprophilus
111 2342732 2342968 - NZ_LT906481.1 Corynebacterium urealyticum
112 359376 359612 + NZ_AP022609.1 Mycolicibacter hiberniae
113 645949 646185 + NZ_CP015235.1 Rhodococcus fascians D188
114 204606 204842 - NZ_LR130759.1 Mycobacterium basiliense
115 756156 756392 - NZ_CP011545.1 Corynebacterium testudinoris
116 1613938 1614174 - NZ_CP022208.1 Rhodococcus pyridinivorans
117 4142938 4143174 - NZ_CP040752.1 Streptomyces rectiverticillatus
118 812414 812650 - NZ_CP011541.1 Corynebacterium epidermidicanis
119 548213 548449 - NC_022198.1 Corynebacterium argentoratense DSM 44202
120 1809354 1809590 + NZ_CP011312.1 Corynebacterium kutscheri
121 487399 487635 - NZ_CP020569.1 Streptomyces gilvosporeus
122 5221626 5221862 - NZ_CP020569.1 Streptomyces gilvosporeus
123 1656079 1656315 - NZ_CP023698.1 Streptomyces viridifaciens
124 1726117 1726353 - NZ_CP023698.1 Streptomyces viridifaciens
125 4085280 4085516 + NC_021252.1 Amycolatopsis keratiniphila
126 4366153 4366389 - NZ_CP008953.1 Amycolatopsis japonica
127 4381642 4381878 + NZ_CP016174.1 Amycolatopsis orientalis
128 1261738 1261974 - NZ_AP022572.1 Mycobacterium shottsii
129 5719952 5720188 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
130 1783375 1783611 - NZ_CP058277.1 Mycobacterium marinum
131 1500214 1500450 - NC_016906.1 Gordonia polyisoprenivorans VH2
132 746287 746523 - NZ_CP007155.1 Kutzneria albida DSM 43870
133 1022211 1022447 - NZ_CP019066.1 Tsukamurella tyrosinosolvens
134 5758499 5758735 + NZ_CP031142.1 Saccharopolyspora pogona
135 3386207 3386443 + NC_014158.1 Tsukamurella paurometabola DSM 20162
136 3991484 3991732 - NZ_AP022575.1 Mycobacterium shinjukuense
137 6326554 6326790 + NZ_CP023202.1 Streptomyces xinghaiensis S187
138 2056863 2057099 + NZ_CP009248.1 Corynebacterium sphenisci DSM 44792
139 1205934 1206170 + NZ_CP068168.1 Corynebacterium amycolatum
140 5488765 5489028 - NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
141 2126246 2126482 + NZ_CP006841.1 Corynebacterium lactis RW2-5
142 6671093 6671329 + NZ_CP029254.1 Streptomyces spongiicola
143 658357 658593 - NC_021985.1 Streptomyces collinus Tu 365
144 4125605 4125841 + NZ_CP023688.1 Streptomyces rimosus
145 7129588 7129824 - NZ_CP010407.1 Streptomyces vietnamensis
146 5082222 5082458 - NZ_CP015098.1 Streptomyces qaidamensis
147 4449405 4449641 + NZ_CP023689.1 Streptomyces chartreusis
148 2621249 2621485 - NZ_CP032788.1 Corynebacterium xerosis
149 5326135 5326371 - NZ_AP023440.1 Streptomyces glomeroaurantiacus
150 4213985 4214221 - NZ_CP061007.1 Saccharopolyspora spinosa
151 1748633 1748869 + NZ_CP065050.1 Streptomyces solisilvae
152 7509639 7509875 + NZ_CP027306.1 Streptomyces atratus
153 2444646 2444882 + NZ_CP015163.1 Amycolatopsis albispora
154 3636658 3636894 - NZ_CP072827.1 Streptomyces mobaraensis NBRC 13819 = DSM 40847
155 4404305 4404541 - NZ_CP072931.1 Streptomyces auratus AGR0001
156 7194278 7194514 + NZ_CP072931.1 Streptomyces auratus AGR0001
157 1197787 1198023 - NC_016113.1 Streptomyces cattleya NRRL 8057 = DSM 46488
158 4370203 4370439 - NZ_CP023695.1 Streptomyces alboniger
159 7587970 7588206 - NZ_CP023692.1 Streptomyces vinaceus
160 5714053 5714289 - NZ_CP034539.1 Streptomyces cyaneochromogenes
161 6952631 6952867 - NZ_CP029196.1 Streptomyces venezuelae
162 9516831 9517067 + NZ_CP063373.1 Streptomyces ferrugineus
163 1935967 1936203 + NZ_CP033972.1 Gordonia insulae
164 6431785 6432021 + NZ_CP029188.1 Streptomyces tirandamycinicus
165 5484840 5485076 - NZ_CP070326.1 Streptomyces noursei
166 751433 751669 - NZ_CP019688.1 Corynebacterium glaucum
167 5917743 5917979 - NZ_CP034463.1 Streptomyces aquilus
168 705442 705678 - NZ_CP009215.1 Corynebacterium ureicelerivorans
169 4180066 4180302 - NZ_AP023439.1 Streptomyces tuirus
170 1528380 1528616 - NC_013441.1 Gordonia bronchialis DSM 43247
171 831927 832163 - NZ_LT906467.1 Corynebacterium imitans
172 2717601 2717837 - NZ_CP030862.1 Streptomyces globosus
173 847058 847294 - NC_009142.1 Saccharopolyspora erythraea NRRL 2338
174 3704161 3704397 - NZ_CP011853.1 Gordonia phthalatica
175 7566380 7566616 + NZ_CP019457.1 Streptomyces lydicus
176 4587873 4588109 + NZ_CP023699.1 Streptomyces kanamyceticus
177 951862 952098 - NZ_CP060404.1 Streptomyces buecherae
178 4748856 4749092 - NZ_CP060404.1 Streptomyces buecherae
179 4452122 4452358 - NZ_CP023703.1 Streptomyces galilaeus
180 6425420 6425656 + NC_020990.1 Streptomyces albidoflavus
181 6819549 6819785 + NZ_CP031742.1 Streptomyces koyangensis
182 7323109 7323345 + NZ_CP024957.1 Streptomyces cavourensis
183 671211 671450 - NC_013093.1 Actinosynnema mirum DSM 43827
184 3106584 3106820 - NZ_CP035037.1 Leucobacter muris
185 2771139 2771375 - NZ_CP054938.1 Streptomyces harbinensis
186 681293 681529 + NZ_CP049934.1 Leucobacter insecticola
187 3661205 3661441 + NZ_CP051486.1 Streptomyces pratensis
188 4807185 4807421 - NZ_CP051486.1 Streptomyces pratensis
189 1004538 1004774 + NZ_CP059694.1 Gordonia rubripertincta
190 646902 647141 - NZ_CP023445.1 Actinosynnema pretiosum
191 689269 689505 + NZ_CP035495.1 Xylanimonas allomyrinae
192 115752 115988 + NZ_CP038157.1 Corynebacterium sanguinis
193 7512366 7512602 + NZ_CP070242.1 Streptomyces californicus
194 7557241 7557477 + NZ_CP020570.1 Streptomyces violaceoruber
195 1429218 1429454 - NZ_CP060716.1 Leucobacter denitrificans
196 990996 991232 - NZ_CP027114.1 Gordonia alkanivorans
197 3585976 3586212 - NZ_CP017316.1 Streptomyces rubrolavendulae
198 3737104 3737340 - NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
199 204423 204659 + NZ_CP049933.1 Leucobacter coleopterorum
200 3071067 3071303 + NZ_CP031194.1 Streptomyces paludis
201 5242549 5242785 - NZ_CP023694.1 Streptomyces coeruleorubidus
202 7476536 7476772 - NZ_CP029043.1 Streptomyces nigra
203 871205 871441 + NZ_CP027433.1 Gordonia iterans
204 3430781 3431017 - NZ_CP031423.1 Microbacterium lemovicicum
205 7837401 7837637 + NZ_CP020563.1 Kitasatospora albolonga
206 7271610 7271846 + NZ_CP013738.1 Streptomyces globisporus C-1027
207 1670144 1670380 + NZ_LT906473.1 Corynebacterium cystitidis
208 730695 730931 - NZ_CP026948.1 Corynebacterium liangguodongii
209 3202500 3202736 - NZ_CP044231.1 Microbacterium caowuchunii
210 1402201 1402437 + NZ_CP061344.1 Microbacterium hominis
211 5668528 5668749 - NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
212 2293053 2293289 + NZ_CP049863.1 Leucobacter viscericola
213 629849 630085 - NC_010572.1 Streptomyces griseus subsp. griseus NBRC 13350
214 220864 221100 + NZ_CP038256.1 Microbacterium sediminis
215 2515924 2516160 - NZ_CP009922.3 Streptomyces xiamenensis
216 3570703 3570939 + NC_013947.1 Stackebrandtia nassauensis DSM 44728
217 1593845 1594078 - NZ_LS483427.1 Arcanobacterium haemolyticum
218 4873579 4873815 - NZ_CP021978.1 Streptomyces hawaiiensis
219 1378955 1379191 - NZ_CP049255.1 Microbacterium endophyticum
220 7696758 7696994 + NC_021177.1 Streptomyces fulvissimus DSM 40593
221 395240 395476 + NZ_CP035504.1 Kocuria indica
222 528489 528725 + NZ_CP014209.1 Isoptericola dokdonensis DS-3
223 194666 194902 + NZ_CP018762.1 Microbacterium aurum
224 1822880 1823116 - NZ_CP014228.1 Actinomyces radicidentis
225 861018 861254 - NC_021915.1 Corynebacterium maris DSM 45190
226 4261894 4262130 + NZ_CP030073.1 Streptomyces cadmiisoli
227 3141430 3141666 - NZ_CP064760.1 Microbacterium schleiferi
228 828918 829154 - NZ_CP006764.1 Corynebacterium doosanense CAU 212 = DSM 45436
229 691374 691610 - NZ_CP007790.1 Corynebacterium marinum DSM 44953
230 2583104 2583340 - NC_022438.1 Leifsonia xyli subsp. cynodontis DSM 46306
231 2071489 2071725 + NZ_CP035806.1 Leucobacter triazinivorans
232 1668713 1668949 - NZ_CP032624.1 Gryllotalpicola protaetiae
233 748582 748818 - NZ_CP066802.1 Actinomyces weissii
234 4339388 4339624 + NZ_CP032427.1 Streptomyces griseorubiginosus
235 168655 168891 + NZ_CP026923.1 Pontimonas salivibrio
236 1100996 1101232 - NZ_CP031264.1 Streptacidiphilus bronchialis
237 3630939 3631175 + NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
238 3861086 3861322 + NZ_LN831790.1 Streptomyces leeuwenhoekii
239 3492721 3492957 - NZ_CP013254.1 Kocuria flava
240 1183844 1184080 - NZ_CP035494.1 Microbacterium protaetiae
241 3236712 3236948 + NZ_CP034279.1 Streptomyces ficellus
242 4228353 4228589 + NC_013235.1 Nakamurella multipartita DSM 44233
243 1728554 1728790 + NZ_CP026947.1 Corynebacterium yudongzhengii
244 400243 400479 - NZ_LR134357.1 Actinomyces israelii
245 2832774 2833010 - NZ_CP031421.1 Microbacterium oleivorans
246 4954576 4954812 - NZ_CP023691.1 Streptomyces platensis
247 3396543 3396779 - NZ_CP031425.1 Microbacterium foliorum
248 3635653 3635889 - NZ_CP031422.1 Microbacterium oxydans
249 5691905 5692141 - NZ_CP022744.1 Streptomyces lincolnensis
250 1488056 1488292 - NZ_LN849456.1 Devriesea agamarum
251 1388953 1389189 - NZ_AP017457.1 Aurantimicrobium minutum
252 1395092 1395328 + NC_014643.1 Rothia dentocariosa ATCC 17931
253 4426005 4426241 + NZ_CP022521.1 Actinoalloteichus hoggarensis
254 5013946 5014182 + NZ_CP016076.1 Actinoalloteichus fjordicus
255 3586837 3587073 - NZ_CP031356.1 Brachybacterium saurashtrense
256 3966748 3966966 - NZ_CP034550.1 Saccharothrix syringae
257 1167439 1167675 - NZ_CP032630.1 Protaetiibacter intestinalis
258 1482760 1482996 - NZ_CP049253.1 Microbacterium amylolyticum
259 2109809 2110045 - NZ_CP061539.1 Rothia terrae
260 2731828 2732064 - NZ_CP033081.1 Glutamicibacter nicotianae
261 2894789 2895025 - NC_014550.1 Glutamicibacter arilaitensis Re117
262 5369084 5369320 - NZ_CP023690.1 Streptomyces spectabilis
263 316232 316468 - NZ_CP029642.1 Arthrobacter dokdonellae
264 2090285 2090521 - NZ_CP056080.1 Rothia nasimurium
265 3973218 3973454 - NZ_CP022310.1 Streptomyces calvus
266 3497495 3497734 + NC_015514.1 Cellulomonas fimi ATCC 484
267 1291924 1292160 - NZ_CP007519.1 Trueperella pyogenes
268 2191802 2192032 + NZ_CP016793.1 Lentzea guizhouensis
269 4011251 4011487 + NZ_CP011340.1 Streptomyces pristinaespiralis
270 2213891 2214127 - NZ_LR134479.1 Rothia aeria
271 798368 798604 + NZ_CP041694.1 Cellulosimicrobium cellulans
272 3805351 3805587 - NZ_CP045529.1 Luteimicrobium xylanilyticum
273 4094354 4094590 + NZ_CP059991.1 Streptomyces gardneri
274 3593295 3593531 - NZ_CP044232.1 Microbacterium lushaniae
275 3755493 3755729 - NZ_CP038266.1 Microbacterium wangchenii
276 2070864 2071100 - NC_012803.1 Micrococcus luteus NCTC 2665
277 451843 452079 + NZ_CP017146.1 Marisediminicola antarctica
278 195395 195631 + NC_014151.1 Cellulomonas flavigena DSM 20109
279 2474348 2474584 - NZ_CP012507.1 Kocuria palustris
280 5311691 5311927 - NZ_CP047020.1 Streptomyces broussonetiae
281 973836 974072 - NZ_CP039292.1 Actinomyces procaprae
282 3960424 3960660 + NZ_CP034687.1 Streptomyces griseoviridis
283 3979662 3979898 - NZ_CP015866.1 Streptomyces parvulus
284 2917287 2917523 - NZ_LR131272.1 Arthrobacter agilis
285 4491924 4492160 + NC_013929.1 Streptomyces scabiei 87.22
286 3898610 3898846 + NZ_CP022753.1 Nocardiopsis gilva YIM 90087
287 2828510 2828746 - NZ_CP026949.1 Mycetocola zhujimingii
288 4394676 4394912 - NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
289 712683 712919 - NZ_CP011546.1 Corynebacterium uterequi
290 3777243 3777479 - NZ_CP068013.1 Paenarthrobacter ureafaciens
291 1793379 1793615 + NZ_CP051884.1 Cellulomonas taurus
292 417178 417414 + NZ_CP071883.1 Curtobacterium flaccumfaciens pv. flaccumfaciens
293 3352158 3352394 + NZ_CP023564.1 Brachybacterium ginsengisoli
294 681480 681719 - NZ_CP053642.1 Actinomyces marmotae
295 6234948 6235184 - NZ_CP045096.1 Streptomyces phaeolivaceus
296 4019187 4019423 - NZ_CP020715.1 Cnuibacter physcomitrellae
297 2551826 2552062 - NZ_CP058670.1 Chryseoglobus indicus
298 935521 935757 + NZ_CP035491.1 Agromyces protaetiae
299 1535877 1536113 - NZ_CP042260.1 Glutamicibacter halophytocola
300 1884722 1884961 + NZ_CP066060.1 Actinomyces oris
301 3159144 3159380 + NZ_CP016353.1 Prauserella marina
302 2839805 2840041 - NZ_CP047186.1 Rathayibacter tanaceti
303 2305732 2305968 - NZ_CP028130.1 Rathayibacter iranicus
304 2348684 2348920 + NZ_LT906453.1 Dermatophilus congolensis
305 3600881 3601117 - NZ_CP047180.1 Rathayibacter festucae
306 4928287 4928523 + NZ_CP045572.1 Nonomuraea nitratireducens
307 28632 28868 + NZ_CP028129.1 Rathayibacter rathayi
308 356622 356858 + NZ_CP015515.1 Rathayibacter tritici
309 4077128 4077364 - NC_013521.1 Sanguibacter keddieii DSM 10542
310 667738 667974 - NZ_CP065682.1 Brevibacterium casei
311 2946143 2946382 + NZ_CP066049.1 Actinomyces naeslundii
312 2010650 2010886 - NZ_CP061538.1 Rothia amarae
313 2556796 2557032 - NZ_CP011005.1 Psychromicrobium lacuslunae
314 1615001 1615240 + NZ_CP020468.1 Actinomyces gaoshouyii
315 3232387 3232623 - NZ_CP033724.1 Clavibacter michiganensis subsp. michiganensis
316 4307838 4308074 - NZ_CP013979.1 Agromyces aureus
317 2257801 2258037 + NZ_CP035033.1 Hydrogenovibrio thermophilus
318 3751603 3751839 + NZ_CP013745.1 Arthrobacter alpinus
319 1401310 1401546 - NZ_CP007490.1 Rhodoluna lacicola
320 2029877 2030113 + NC_009664.2 Kineococcus radiotolerans SRS30216 = ATCC BAA-149
321 2985505 2985741 - NZ_CP028913.1 Agromyces badenianii
322 2400942 2401172 + NZ_CP053564.1 Pseudonocardia broussonetiae
323 647503 647739 - NZ_CP018863.1 Arthrobacter crystallopoietes
324 2561176 2561412 + NC_010168.1 Renibacterium salmoninarum ATCC 33209
325 2662318 2662554 + NZ_CP044483.1 Acinetobacter schindleri
326 2575825 2576061 - NZ_CP034412.1 Glutamicibacter creatinolyticus
327 1412667 1412903 + NZ_CP019400.1 Acidipropionibacterium acidipropionici
328 2975377 2975610 + NC_017093.1 Actinoplanes missouriensis 431
329 4887510 4887746 - NZ_CP071839.1 Streptomyces cyanogenus
330 3619599 3619835 - NZ_CP026734.1 Brevibacterium linens
331 588473 588709 + NC_015671.1 Cellulomonas gilvus ATCC 13127
332 6274035 6274271 - NZ_AP018920.1 Pseudonocardia autotrophica
333 132174 132410 + NC_004572.3 Tropheryma whipplei str. Twist
334 594238 594474 - NC_014147.1 Moraxella catarrhalis BBH18
335 2148419 2148664 - NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
336 662516 662755 - NC_019673.1 Saccharothrix espanaensis DSM 44229
337 607658 607891 + NZ_CP070228.1 Arcanobacterium phocisimile
338 2945514 2945750 - NZ_CP045571.1 Acidithiobacillus thiooxidans ATCC 19377
339 2165282 2165518 - NZ_CP035810.1 Brevibacterium luteolum
340 990795 991031 - NZ_CP071766.1 Acinetobacter towneri
341 529757 529993 - NZ_CP032134.1 Acinetobacter chinensis
342 494222 494458 - NC_005966.1 Acinetobacter baylyi ADP1
343 428061 428297 - NZ_CP045650.1 Acinetobacter wanghuae
344 1276437 1276673 - NZ_CP012808.1 Acinetobacter equi
345 2949295 2949531 + NZ_CP029397.2 Acinetobacter defluvii
346 2889196 2889432 + NZ_CP049916.1 Acinetobacter lanii
347 2991159 2991395 + NZ_CP035934.2 Acinetobacter cumulans
348 577997 578233 - NZ_CP049801.1 Acinetobacter shaoyimingii
349 3260075 3260311 + NZ_CP016895.1 Acinetobacter larvae
350 1551790 1552026 + NZ_CP040105.1 Acinetobacter nosocomialis M2
351 3609765 3610001 - NC_016603.1 Acinetobacter pittii PHEA-2
352 1444410 1444646 + NZ_CP070518.1 Acinetobacter calcoaceticus
353 3475046 3475282 + NZ_CP053391.1 Acinetobacter lactucae
354 3459467 3459703 + NZ_CP015121.1 Acinetobacter baumannii
355 3571388 3571624 + NZ_CP065820.1 Acinetobacter seifertii
356 3660035 3660271 + NC_014259.1 Acinetobacter oleivorans DR1
357 520572 520808 - NZ_AP014630.1 Acinetobacter guillouiae
358 18693 18929 - NC_021064.1 Cutibacterium avidum 44067
359 3827847 3828083 - NZ_CP025333.1 Brevibacterium aurantiacum
360 2801644 2801880 + NZ_CP024632.1 Acinetobacter junii
361 2973276 2973512 + NZ_CP030880.1 Acinetobacter haemolyticus
362 2573272 2573508 + NZ_CP041970.1 Acinetobacter dispersus
363 582392 582628 + NZ_CP072793.1 Thiothrix unzii
364 2316425 2316661 + NZ_CP018135.1 Neomicrococcus aestuarii
365 4123070 4123306 - NZ_CP016282.1 Cryobacterium arcticum
366 1946375 1946611 + NC_015635.1 Microlunatus phosphovorus NM-1
367 2522159 2522395 + NZ_CP030033.1 Cryobacterium soli
368 204845 205081 + NZ_CP045871.1 Litoricola lipolytica
369 361084 361320 - NZ_CP054020.1 Thiomicrorhabdus xiamenensis
370 2342265 2342501 + NC_006085.1 Cutibacterium acnes KPA171202
371 816303 816539 - NZ_CP011381.2 Moraxella bovoculi
372 4740871 4741107 - NZ_CP035467.1 Methylotuvimicrobium buryatense
373 4480947 4481183 - NC_016112.1 Methylotuvimicrobium alcaliphilum 20Z
374 1876568 1876804 - NZ_CP016171.1 Bordetella bronchialis
375 795805 796041 + NZ_LR134365.1 Cardiobacterium hominis
376 615805 616041 - NZ_AP018795.1 Acidithiobacillus ferridurans
377 2371072 2371308 - NC_011761.1 Acidithiobacillus ferrooxidans ATCC 23270
378 886285 886521 - NZ_CP011158.1 Moraxella ovis
379 1656071 1656307 - NZ_CP065728.1 Moraxella nonliquefaciens
380 174405 174641 - NZ_CP016268.1 Woeseia oceani
381 599377 599613 + NC_015942.1 Acidithiobacillus ferrivorans SS3
382 775206 775442 - NZ_CP048812.1 Halomonas socia
383 2702264 2702500 + NZ_CP014945.1 Psychrobacter alimentarius
384 1341744 1341980 + NZ_CP042382.1 Pistricoccus aurantiacus
385 148743 148982 - NZ_LR134477.1 Actinomyces viscosus
386 1180521 1180757 - NZ_LR134343.1 Moraxella cuniculi
387 2539852 2540088 - NC_008789.1 Halorhodospira halophila SL1
388 1596832 1597107 - NZ_CP040635.1 Acidipropionibacterium jensenii
389 941999 942235 + NZ_CP030241.1 Moraxella bovis
390 3896770 3897006 + NZ_CP041146.1 Nocardioides humi
391 3270697 3270933 - NC_009380.1 Salinispora tropica CNB-440
392 209714 209950 + NZ_LR134418.1 Legionella adelaidensis
393 2782565 2782801 - NZ_LR884459.1 Psychrobacter arenosus
394 2112006 2112242 + NC_007204.1 Psychrobacter arcticus 273-4
395 2450711 2450947 + NC_007969.1 Psychrobacter cryohalolentis K5
396 2467050 2467286 - NZ_LR134406.1 Arachnia propionica
397 120813 121049 + NZ_CP041036.1 Shewanella polaris
398 5985883 5986119 - NC_002516.2 Pseudomonas aeruginosa PAO1
399 358571 358807 - NZ_CP061725.1 Micromonospora craniellae
400 2872423 2872659 - NZ_CP043420.1 Kushneria phosphatilytica
401 2294702 2294938 + NC_011566.1 Shewanella piezotolerans WP3
402 552060 552296 + NZ_AP022843.1 Halomonas hydrothermalis
403 553695 553931 + NZ_CP065135.1 Halomonas venusta
404 669253 669489 - NZ_CP020931.1 Marinobacter salarius
405 4384955 4385191 - NZ_CP035704.1 Pseudolysobacter antarcticus
406 403359 403595 + NZ_CP022358.1 Shewanella bicestrii
407 565494 565730 + NZ_CP048602.1 Halomonas piezotolerans
408 1193891 1194127 + NZ_CP023693.1 Streptomyces cinereoruber
409 441047 441283 + NC_016901.1 Shewanella baltica OS678
410 952306 952539 - NZ_CP041352.1 Casimicrobium huifangae
411 3707693 3707929 - NZ_CP017715.1 Marinobacter salinus
412 537082 537318 + NZ_CP022295.1 Nocardioides aromaticivorans
413 3246537 3246773 - NZ_CP013189.1 Pseudohongiella spirulinae
414 460141 460377 + NZ_CP011502.1 Aeromicrobium erythreum
415 3894861 3895097 - NZ_CP022272.1 Shewanella marisflavi
416 4166357 4166593 - NC_009092.1 Shewanella loihica PV-4
417 411179 411415 + NZ_CP017248.1 Streptomyces fodineus
418 8287638 8287874 - NZ_CP017248.1 Streptomyces fodineus
419 4569844 4570080 - NZ_LR134302.1 Achromobacter spanius
420 4614138 4614374 - NC_014391.1 Micromonospora aurantiaca ATCC 27029
421 1423048 1423284 - NZ_LR134363.1 Actinomyces slackii
422 3614070 3614306 + NZ_CP041783.1 Shewanella donghaensis
423 407344 407580 + NZ_CP020472.1 Shewanella japonica
424 451208 451444 + NC_009831.1 Shewanella sediminis HAW-EB3
425 5530378 5530614 - NC_010506.1 Shewanella woodyi ATCC 51908
426 4174091 4174327 + NZ_CP043042.1 Marinobacter fonticola
427 1390709 1390945 - NZ_CP040508.1 Rhodoluna limnophila
428 3719379 3719615 - NZ_CP037951.1 Parashewanella tropica
429 3484166 3484402 + NC_017506.1 Marinobacter adhaerens HP15
430 3349392 3349628 - NC_015559.1 Marinomonas posidonica IVIA-Po-181
431 4654983 4655219 - NC_014012.1 Shewanella violacea DSS12
432 365439 365675 + NC_007954.1 Shewanella denitrificans OS217
433 2827819 2828055 + NZ_CP036200.1 Shewanella maritima
434 5904249 5904485 - NZ_CP047698.1 Pseudomonas knackmussii
435 865148 865384 + NZ_CP048833.1 Pseudomonas multiresinivorans
436 6750397 6750633 - NZ_CP014158.1 Pseudomonas citronellolis
437 1240810 1241046 - NZ_HG916765.1 Castellaniella defragrans 65Phen
438 3476504 3476740 + NC_010170.1 Bordetella petrii
439 4565113 4565349 - NC_008345.1 Shewanella frigidimarina NCIMB 400
440 577997 578233 + NZ_CP034015.1 Shewanella livingstonensis
441 3202726 3202962 + NZ_CP053986.1 Achromobacter denitrificans
442 1925637 1925870 - NZ_AP014568.1 Serpentinomonas raichei
443 547775 548008 + NZ_CP009896.1 Pimelobacter simplex
444 166858 167091 + NZ_CP007039.1 Pseudomonas cichorii JBC1
445 571665 571901 - NZ_CP016279.1 Streptomyces griseochromogenes
446 4549553 4549789 + NZ_CP020373.1 Shewanella khirikhana
447 330258 330494 + NZ_CP069213.1 Shewanella litorisediminis
448 395265 395501 + NC_008700.1 Shewanella amazonensis SB2B
449 6628616 6628849 - NZ_CP061079.1 Pseudomonas chlororaphis
450 3078772 3079008 + NZ_LT907988.1 Orrella dioscoreae
451 6573164 6573400 - NZ_CP048882.1 Streptomyces bathyalis
452 4529509 4529745 - NZ_CP046378.1 Shewanella algae
453 1435470 1435706 + NZ_LR134442.1 Propionibacterium australiense
454 258642 258875 + NZ_CP068034.2 Pseudomonas syringae
455 22054 22287 - NZ_CP067022.1 Pseudomonas cannabina pv. alisalensis
456 172234 172467 + NZ_CP042804.1 Pseudomonas amygdali pv. tabaci str. ATCC 11528
457 110860 111093 + NC_004578.1 Pseudomonas syringae pv. tomato str. DC3000
458 607135 607371 - NZ_CP021323.1 Kushneria konosiri
459 2701009 2701245 + NZ_CP021358.1 Kushneria marisflavi
460 6797027 6797260 + NZ_CP012400.2 Pseudomonas yamanorum
461 776153 776389 - NZ_CP025227.1 Actinomyces wuliandei
462 2985436 2985672 - NZ_AP021881.1 Sulfuriferula nivalis
463 1133576 1133812 + NZ_LR134350.1 Actinomyces howellii
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00253.23 0.75 342 169 same-strand Ribosomal protein S14p/S29e
2 PF00471.22 0.98 447 4 same-strand Ribosomal protein L33
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