Result : P9WF09
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Toxin RelK (EC 3.1.-.-) (Endoribonuclease YoeB) (Putative mRNA interferase RelE3) (Putative mRNA interferase YoeB) (Toxin YoeB) |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 3771045 |
| Right | 3771302 |
| Strand | + |
| Nucleotide Sequence | GTGAGAAGCGTCAACTTCGATCCCGATGCCTGGGAGGACTTCTTGTTCTGGCTGGCCGCTGATCGCAAAACGGCCCGTCGGATCACCCGGTTGATCGGAGAAATTCAGCGTGATCCGTTCAGCGGGATCGGCAAACCCGAGCCGCTCCAAGGTGAGTTGTCGGGATACTGGTCGCGCCGGATCGACGACGAACACCGGCTGGTGTATCGAGCGGGCGACGACGAAGTCACGATGCTGAAGGCCCGATACCACTACTGA |
| Sequence | MRSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLKARYHY |
| Source of smORF | Swiss-Prot |
| Function | Toxic component of a type II toxin-antitoxin (TA) system. Has RNase activity and preferentially cleaves at the 3'-end of purine ribonucleotides (By similarity). Overexpression in M.tuberculosis or M.smegmatis inhibits colony formation in a bacteriostatic rather than bacteriocidal fashion. Its toxic effect is neutralized by coexpression with antitoxin RelJ (shown only for M.smegmatis). Overexpression also increases the number of rifampcin-tolerant persister cells. {ECO:0000250, ECO:0000269|Pubmed:19114484, ECO:0000269|Pubmed:20011113, ECO:0000269|Pubmed:20061486, ECO:0000269|Pubmed:20498855}.; In combination with RelJ represses its own promoter. Several DNA-protein complexes are formed in vitro depending on the RelJ:RelK ratio. |
| Pubmed ID | 9634230 18793646 19114484 20011113 20061486 20498855 |
| Domain | CDD:419697 |
| Functional Category | DNA-binding_and_RNA-binding_and_Toxin_type_2 |
| Uniprot ID | P9WF09 |
| ORF Length (Amino Acid) | 85 |
++ More..
| Conservation Analysis |
No. of Species: 329
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3771045 | 3771302 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 3840756 | 3841013 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 3 | 2102198 | 2102455 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 4 | 2750115 | 2750372 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 5 | 105485 | 105742 | + | NC_022654.1 | Mycobacterium kansasii ATCC 12478 |
| 6 | 2433853 | 2434110 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 7 | 2211481 | 2211741 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 8 | 3795830 | 3796087 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 9 | 5084458 | 5084715 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 10 | 4114618 | 4114875 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 11 | 2437810 | 2438070 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 12 | 355394 | 355651 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 13 | 535057 | 535317 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 14 | 6038026 | 6038289 | + | NZ_CP030862.1 | Streptomyces globosus |
| 15 | 463041 | 463295 | + | NZ_CP030862.1 | Streptomyces globosus |
| 16 | 5230990 | 5231247 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 17 | 2710772 | 2711029 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 18 | 6501912 | 6502169 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 19 | 3711891 | 3712148 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 20 | 3948923 | 3949186 | - | NZ_LS483250.1 | Moritella yayanosii |
| 21 | 1148776 | 1149036 | + | NZ_LS483250.1 | Moritella yayanosii |
| 22 | 1267112 | 1267375 | - | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 23 | 2429942 | 2430196 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 24 | 4669763 | 4670032 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 25 | 1133355 | 1133576 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 26 | 3042920 | 3043168 | - | NZ_CP017755.1 | Cupriavidus malaysiensis |
| 27 | 1560393 | 1560608 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 28 | 4378386 | 4378655 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 29 | 339771 | 340031 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 30 | 307540 | 307794 | + | NC_014718.1 | Mycetohabitans rhizoxinica HKI 454 |
| 31 | 453182 | 453439 | - | NZ_CP028901.1 | Algicoccus marinus |
| 32 | 3010041 | 3010259 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 33 | 5598280 | 5598534 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 34 | 1474137 | 1474397 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 35 | 770854 | 771069 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 36 | 2040110 | 2040361 | - | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 37 | 2060723 | 2060977 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 38 | 2228334 | 2228588 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 39 | 950104 | 950355 | - | NC_007511.1 | Burkholderia lata |
| 40 | 1960029 | 1960295 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 41 | 2398915 | 2399172 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 42 | 1338418 | 1338672 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 43 | 2821128 | 2821373 | + | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 44 | 2823626 | 2823871 | + | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 45 | 2487776 | 2488030 | - | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 46 | 3744828 | 3745085 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 47 | 1117579 | 1117836 | - | NZ_CP070625.1 | Photobacterium damselae subsp. damselae |
| 48 | 5905124 | 5905378 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 49 | 417796 | 418041 | - | NZ_CP054841.1 | Acidovorax antarcticus |
| 50 | 2031665 | 2031910 | + | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 51 | 2558713 | 2558967 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 52 | 15554 | 15814 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 53 | 1900527 | 1900802 | + | NC_002971.4 | Coxiella burnetii RSA 493 |
| 54 | 1983409 | 1983666 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 55 | 1733691 | 1733945 | + | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 56 | 1007802 | 1008017 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 57 | 2235141 | 2235398 | + | NZ_CP016878.1 | Xanthomonas hortorum |
| 58 | 1347656 | 1347925 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 59 | 1772341 | 1772595 | + | NZ_CP020121.1 | Comamonas kerstersii |
| 60 | 566307 | 566561 | - | NZ_CP043575.1 | Comamonas koreensis |
| 61 | 3997841 | 3998095 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 62 | 1864198 | 1864467 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 63 | 363203 | 363418 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 64 | 807401 | 807649 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 65 | 938200 | 938454 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 66 | 301071 | 301322 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 67 | 1252194 | 1252454 | - | NZ_CP064760.1 | Microbacterium schleiferi |
| 68 | 518832 | 519047 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 69 | 1300337 | 1300591 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 70 | 164824 | 165084 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 71 | 12414 | 12698 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 72 | 989599 | 989853 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 73 | 1682633 | 1682887 | + | NZ_CP017715.1 | Marinobacter salinus |
| 74 | 1112907 | 1113161 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 75 | 2060684 | 2060938 | - | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 76 | 3636864 | 3637124 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 77 | 1418806 | 1419060 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 78 | 1957132 | 1957386 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 79 | 787578 | 787838 | - | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 80 | 1504891 | 1505145 | + | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 81 | 620703 | 620957 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 82 | 3493313 | 3493579 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 83 | 315172 | 315426 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 84 | 1293125 | 1293379 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 85 | 5259370 | 5259627 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 86 | 5697855 | 5698076 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 87 | 5149973 | 5150227 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 88 | 2596424 | 2596684 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 89 | 1617603 | 1617818 | - | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 90 | 4912341 | 4912595 | + | NZ_CP059082.1 | Halomonas titanicae |
| 91 | 1816232 | 1816495 | - | NZ_CP059082.1 | Halomonas titanicae |
| 92 | 875921 | 876175 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 93 | 474873 | 475133 | + | NC_008789.1 | Halorhodospira halophila SL1 |
| 94 | 58868 | 59137 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 95 | 1190573 | 1190788 | - | NZ_CP018762.1 | Microbacterium aurum |
| 96 | 1933170 | 1933418 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 97 | 610955 | 611170 | + | NC_011313.1 | Aliivibrio salmonicida LFI1238 |
| 98 | 1596414 | 1596674 | - | NC_007969.1 | Psychrobacter cryohalolentis K5 |
| 99 | 1562898 | 1563113 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 100 | 2374950 | 2375237 | + | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 101 | 5760822 | 5761076 | - | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 102 | 2765616 | 2765870 | + | NZ_AP021875.1 | Desulfosarcina widdelii |
| 103 | 4810524 | 4810778 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 104 | 837929 | 838135 | + | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 105 | 1280063 | 1280314 | - | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 106 | 3914518 | 3914772 | - | NZ_CP061081.1 | Marinomonas arctica |
| 107 | 232370 | 232624 | + | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 108 | 201412 | 201672 | - | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 109 | 2422719 | 2422976 | + | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 110 | 4648637 | 4648885 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 111 | 1998190 | 1998444 | + | NZ_LT906451.1 | Legionella lansingensis |
| 112 | 1276466 | 1276717 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 113 | 159180 | 159443 | - | NZ_CP046794.1 | Vibrio metschnikovii |
| 114 | 26328 | 26585 | + | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 115 | 1319782 | 1320042 | - | NZ_CP059564.1 | Alysiella filiformis |
| 116 | 2769763 | 2770020 | + | NZ_CP036259.1 | Sporomusa termitida |
| 117 | 2013326 | 2013592 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 118 | 2978718 | 2978978 | - | NZ_CP012661.1 | Defluviimonas alba |
| 119 | 1471944 | 1472192 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 120 | 873888 | 874166 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 121 | 172657 | 172911 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 122 | 3988770 | 3989027 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 123 | 3312662 | 3312910 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 124 | 994095 | 994373 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 125 | 2905252 | 2905506 | - | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 126 | 413187 | 413444 | - | NZ_CP063145.1 | Cruoricaptor ignavus |
| 127 | 4169816 | 4170070 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 128 | 3524472 | 3524732 | - | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 129 | 1267975 | 1268232 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 130 | 3175896 | 3176153 | + | NZ_CP026652.1 | Streptomyces dengpaensis |
| 131 | 879972 | 880190 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 132 | 645217 | 645471 | - | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 133 | 861001 | 861261 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 134 | 2335681 | 2335935 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 135 | 2383083 | 2383352 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 136 | 2335585 | 2335827 | + | NZ_CP034161.1 | Epilithonimonas vandammei |
| 137 | 2582273 | 2582479 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 138 | 1376502 | 1376768 | + | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 139 | 63234 | 63485 | + | NZ_CP032095.1 | Vibrio alfacsensis |
| 140 | 3716354 | 3716617 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 141 | 1868350 | 1868568 | - | NZ_LR134503.1 | Kaistella jeonii |
| 142 | 1502788 | 1503048 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 143 | 1050975 | 1051229 | - | NZ_CP021323.1 | Kushneria konosiri |
| 144 | 2106014 | 2106268 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 145 | 2409017 | 2409283 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 146 | 3385266 | 3385523 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 147 | 821191 | 821454 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 148 | 551224 | 551478 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 149 | 1433524 | 1433778 | + | NZ_CP020104.1 | Spirosoma aerolatum |
| 150 | 56485 | 56733 | - | NZ_CP029211.1 | Aquabacterium olei |
| 151 | 758337 | 758591 | - | NZ_AP022843.1 | Halomonas hydrothermalis |
| 152 | 1025170 | 1025388 | + | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 153 | 6037328 | 6037582 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 154 | 6040563 | 6040817 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 155 | 46928 | 47194 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 156 | 1401759 | 1402013 | - | NZ_CP031699.1 | Neisseria animalis |
| 157 | 603977 | 604231 | + | NZ_CP016540.2 | Planococcus versutus |
| 158 | 1945459 | 1945719 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 159 | 730759 | 731022 | + | NZ_CP065135.1 | Halomonas venusta |
| 160 | 40725 | 40991 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 161 | 2540614 | 2540880 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 162 | 399404 | 399664 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 163 | 6094171 | 6094386 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 164 | 3071848 | 3072102 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 165 | 966218 | 966472 | - | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 166 | 6111298 | 6111552 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 167 | 468513 | 468767 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 168 | 3044839 | 3045096 | + | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 169 | 1170992 | 1171252 | - | NZ_CP014228.1 | Actinomyces radicidentis |
| 170 | 2112556 | 2112804 | + | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 171 | 1131391 | 1131645 | + | NZ_CP047165.1 | Pelistega ratti |
| 172 | 6421539 | 6421793 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 173 | 6706465 | 6706716 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 174 | 2425261 | 2425524 | + | NZ_CP025227.1 | Actinomyces wuliandei |
| 175 | 4491763 | 4492011 | - | NZ_CP036299.1 | Planctopirus ephydatiae |
| 176 | 1094580 | 1094849 | + | NZ_CP048812.1 | Halomonas socia |
| 177 | 5620052 | 5620312 | - | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 178 | 933636 | 933893 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 179 | 1619644 | 1619904 | - | NZ_CP014945.1 | Psychrobacter alimentarius |
| 180 | 21595 | 21849 | + | NZ_CP048880.1 | Spartinivicinus ruber |
| 181 | 1410638 | 1410892 | + | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 182 | 3674415 | 3674663 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 183 | 1185755 | 1186009 | - | NZ_CP038017.1 | Allofrancisella frigidaquae |
| 184 | 1175948 | 1176208 | - | NZ_CP028897.1 | Dongshaea marina |
| 185 | 4207173 | 4207433 | + | NZ_LS483422.1 | Providencia heimbachae |
| 186 | 3214516 | 3214779 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 187 | 3199968 | 3200219 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 188 | 4773448 | 4773702 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 189 | 1831638 | 1831889 | + | NZ_LT906434.1 | Neisseria zoodegmatis |
| 190 | 1836324 | 1836587 | - | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 191 | 1310443 | 1310706 | + | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 192 | 350320 | 350577 | + | NZ_CP072793.1 | Thiothrix unzii |
| 193 | 3061047 | 3061301 | + | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 194 | 1986401 | 1986661 | + | NZ_CP009228.1 | Treponema putidum |
| 195 | 224106 | 224366 | - | NZ_CP009228.1 | Treponema putidum |
| 196 | 1335971 | 1336228 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 197 | 373405 | 373659 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 198 | 1990347 | 1990556 | + | NZ_CP007139.1 | Fimbriimonas ginsengisoli Gsoil 348 |
| 199 | 1411529 | 1411783 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 200 | 3666540 | 3666800 | + | NC_018020.1 | Turneriella parva DSM 21527 |
| 201 | 1458751 | 1458984 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 202 | 526885 | 527151 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 203 | 1469206 | 1469460 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 204 | 2335717 | 2335977 | - | NC_007912.1 | Saccharophagus degradans 2-40 |
| 205 | 4747572 | 4747826 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 206 | 2407728 | 2407994 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 207 | 2291888 | 2292148 | - | NZ_CP011391.1 | Faecalibaculum rodentium |
| 208 | 927693 | 927953 | + | NZ_LR134479.1 | Rothia aeria |
| 209 | 2859668 | 2859922 | + | NZ_CP044331.1 | Methylocystis parvus |
| 210 | 1684717 | 1684971 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 211 | 5164619 | 5164873 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 212 | 1209349 | 1209609 | + | NZ_CP018799.1 | Mariprofundus aestuarium |
| 213 | 1995728 | 1995982 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 214 | 4255577 | 4255831 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 215 | 3608528 | 3608743 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 216 | 511384 | 511641 | - | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 217 | 679548 | 679754 | + | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 218 | 3066310 | 3066537 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 219 | 907002 | 907250 | + | NZ_CP042812.1 | Malaciobacter canalis |
| 220 | 3176233 | 3176487 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 221 | 1475564 | 1475782 | - | NZ_CP009788.1 | Geobacter pickeringii |
| 222 | 52067 | 52321 | + | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 223 | 1148207 | 1148473 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 224 | 996813 | 997067 | + | NZ_CP043405.1 | Streptococcus ratti |
| 225 | 913959 | 914225 | + | NZ_CP013979.1 | Agromyces aureus |
| 226 | 4650003 | 4650263 | - | NZ_CP022752.1 | Actinopolyspora erythraea |
| 227 | 1548725 | 1548982 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 228 | 4702304 | 4702558 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 229 | 1882676 | 1882885 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 230 | 747683 | 747943 | - | NZ_CP041146.1 | Nocardioides humi |
| 231 | 17211 | 17468 | - | NZ_CP015450.1 | Dietzia lutea |
| 232 | 2215903 | 2216157 | - | NZ_CP066060.1 | Actinomyces oris |
| 233 | 789199 | 789456 | - | NZ_CP045508.1 | Desulfolutivibrio sulfoxidireducens |
| 234 | 1787418 | 1787672 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 235 | 864447 | 864701 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 236 | 1379480 | 1379734 | - | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 237 | 5236790 | 5237050 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 238 | 1365347 | 1365607 | + | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 239 | 1662841 | 1663068 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 240 | 4413683 | 4413940 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 241 | 4349928 | 4350182 | - | NZ_CP009365.1 | Pseudomonas soli |
| 242 | 1627377 | 1627637 | - | NZ_AP021861.1 | Lacipirellula parvula |
| 243 | 2617431 | 2617649 | + | NZ_CP037933.1 | Flavobacterium nackdongense |
| 244 | 3793975 | 3794229 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 245 | 1389469 | 1389735 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 246 | 872558 | 872812 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 247 | 2687299 | 2687559 | - | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 248 | 7110809 | 7111066 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 249 | 137645 | 137899 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 250 | 2379918 | 2380166 | - | NZ_CP061539.1 | Rothia terrae |
| 251 | 3950152 | 3950412 | - | NZ_CP061800.1 | Desulfonema magnum |
| 252 | 3066506 | 3066721 | + | NZ_CP061800.1 | Desulfonema magnum |
| 253 | 838645 | 838899 | - | NZ_CP022316.1 | Brachybacterium avium |
| 254 | 23994 | 24248 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 255 | 3710386 | 3710640 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 256 | 1258006 | 1258221 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 257 | 1491061 | 1491324 | - | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 258 | 19732 | 20001 | - | NC_016028.1 | Komagataeibacter medellinensis NBRC 3288 |
| 259 | 3498487 | 3498741 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 260 | 1250328 | 1250546 | + | NZ_CP030241.1 | Moraxella bovis |
| 261 | 5368547 | 5368762 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 262 | 2290236 | 2290490 | - | NZ_CP022048.2 | Brevundimonas vesicularis |
| 263 | 1542706 | 1542963 | - | NZ_CP014263.1 | Spirosoma montaniterrae |
| 264 | 1116290 | 1116556 | - | NZ_CP020715.1 | Cnuibacter physcomitrellae |
| 265 | 5325513 | 5325767 | - | NZ_CP027860.1 | Ahniella affigens |
| 266 | 1586555 | 1586809 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 267 | 1267943 | 1268209 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 268 | 4197250 | 4197507 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 269 | 4411645 | 4411899 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 270 | 2248156 | 2248410 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 271 | 499998 | 500252 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 272 | 4371826 | 4372080 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 273 | 3206489 | 3206755 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 274 | 5343328 | 5343597 | + | NZ_CP030265.1 | Skermanella pratensis |
| 275 | 164049 | 164303 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 276 | 3610462 | 3610680 | - | NC_016894.1 | Acetobacterium woodii DSM 1030 |
| 277 | 85914 | 86174 | + | NC_014390.1 | Butyrivibrio proteoclasticus B316 |
| 278 | 1348943 | 1349206 | + | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 279 | 396076 | 396330 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 280 | 3323906 | 3324175 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 281 | 1519009 | 1519263 | + | NZ_AP017369.1 | Corynebacterium suranareeae |
| 282 | 540212 | 540469 | - | NZ_CP056080.1 | Rothia nasimurium |
| 283 | 1721456 | 1721701 | - | NZ_CP056080.1 | Rothia nasimurium |
| 284 | 711944 | 712198 | - | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 285 | 2622842 | 2623096 | - | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 286 | 78578 | 78838 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 287 | 239759 | 240013 | - | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 288 | 4361247 | 4361507 | + | NZ_CP022685.1 | Streptomyces formicae |
| 289 | 170096 | 170344 | - | NZ_CP035810.1 | Brevibacterium luteolum |
| 290 | 1858123 | 1858380 | + | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 291 | 14990 | 15259 | - | NC_021992.1 | Acetobacter pasteurianus 386B |
| 292 | 113718 | 113975 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 293 | 1980059 | 1980319 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 294 | 2329074 | 2329328 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 295 | 1350241 | 1350486 | + | NZ_CP060723.1 | Pedobacter roseus |
| 296 | 2244181 | 2244435 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 297 | 2789747 | 2790001 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 298 | 3255800 | 3256060 | - | NZ_CP009571.1 | Sphingomonas taxi |
| 299 | 3577302 | 3577559 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 300 | 3578417 | 3578671 | + | NZ_CP061725.1 | Micromonospora craniellae |
| 301 | 1765113 | 1765334 | - | NZ_CP024935.1 | Paraburkholderia graminis |
| 302 | 1609776 | 1610030 | + | NZ_CP038241.1 | Allofrancisella inopinata |
| 303 | 135055 | 135306 | - | NZ_CP024942.1 | Paraburkholderia terricola |
| 304 | 556366 | 556626 | - | NZ_LR134406.1 | Arachnia propionica |
| 305 | 2800866 | 2801120 | - | NZ_LR134406.1 | Arachnia propionica |
| 306 | 3311260 | 3311466 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 307 | 1642109 | 1642363 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 308 | 4969825 | 4970079 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 309 | 1101531 | 1101785 | + | NZ_CP026734.1 | Brevibacterium linens |
| 310 | 432223 | 432483 | - | NZ_CP034549.1 | Nonlabens ponticola |
| 311 | 1826352 | 1826612 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 312 | 3153699 | 3153950 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 313 | 371707 | 371961 | - | NZ_CP010827.1 | Corynebacterium singulare |
| 314 | 68203 | 68466 | + | NZ_CP033066.1 | Pseudoalteromonas agarivorans |
| 315 | 439728 | 440030 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 316 | 1060543 | 1060806 | + | NC_014935.1 | Nitratifractor salsuginis DSM 16511 |
| 317 | 2843123 | 2843383 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 318 | 1578882 | 1579142 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 319 | 861840 | 862091 | - | NZ_CP048649.1 | Aminipila butyrica |
| 320 | 3018165 | 3018425 | + | NC_007777.1 | Frankia casuarinae |
| 321 | 914435 | 914689 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 322 | 1378008 | 1378274 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 323 | 1798180 | 1798434 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 324 | 585443 | 585703 | + | NZ_LR134442.1 | Propionibacterium australiense |
| 325 | 1102909 | 1103124 | + | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 326 | 1099250 | 1099465 | - | NZ_AP019563.1 | Rickettsia asiatica |
| 327 | 1343842 | 1344099 | + | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 328 | 997902 | 998120 | - | NZ_CP020918.1 | Flavobacterium faecale |
| 329 | 2316729 | 2316983 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 330 | 568813 | 569079 | - | NZ_LT907988.1 | Orrella dioscoreae |
| 331 | 3484396 | 3484662 | + | NZ_CP015093.1 | Salipiger abyssi |
| 332 | 1605682 | 1605942 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 333 | 2323677 | 2323931 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 334 | 3073920 | 3074180 | + | NZ_CP070242.1 | Streptomyces californicus |
| 335 | 1930151 | 1930369 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 336 | 5377572 | 5377835 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 337 | 828600 | 828854 | + | NZ_CP035504.1 | Kocuria indica |
| 338 | 1107318 | 1107572 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 339 | 70575 | 70835 | - | NZ_CP066802.1 | Actinomyces weissii |
| 340 | 2806168 | 2806431 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 341 | 2210894 | 2211160 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 342 | 2893224 | 2893493 | + | NC_013173.1 | Desulfomicrobium baculatum DSM 4028 |
| 343 | 1168161 | 1168415 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 344 | 845966 | 846220 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 345 | 156037 | 156282 | + | NZ_CP036291.1 | Pirellulimonas nuda |
| 346 | 816615 | 816821 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 347 | 2698502 | 2698720 | - | NZ_CP017774.1 | Flavobacterium commune |
| 348 | 286454 | 286720 | + | NZ_CP054616.1 | Azospirillum oryzae |
| 349 | 2646632 | 2646892 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 350 | 943743 | 943994 | + | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 351 | 597288 | 597506 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 352 | 1313995 | 1314252 | + | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 353 | 1743301 | 1743567 | - | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 354 | 426496 | 426759 | + | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 355 | 5357025 | 5357291 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 356 | 4159111 | 4159335 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 357 | 85485 | 85748 | + | NC_013192.1 | Leptotrichia buccalis C-1013-b |
| 358 | 2618309 | 2618572 | - | NZ_AP019845.1 | Leptotrichia trevisanii |
| 359 | 3201902 | 3202168 | + | NZ_CP015515.1 | Rathayibacter tritici |
| 360 | 1756044 | 1756298 | - | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 361 | 3093844 | 3094104 | - | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 362 | 5817990 | 5818220 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 363 | 3048041 | 3048286 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02604.21 | 0.93 | 305 | -3.0 | same-strand | Antitoxin Phd YefM, type II toxin-antitoxin system |
++ More..