* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034943.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00005.29
|
1.0
|
9
|
5046
|
opposite-strand
|
ABC transporter
|
2
|
PF02687.23
|
0.89
|
8
|
3600.0
|
opposite-strand
|
FtsX-like permease family
|
3
|
PF00486.30
|
0.89
|
8
|
2704.0
|
same-strand
|
Transcriptional regulatory protein, C terminal
|
4
|
PF00072.26
|
0.89
|
8
|
2704.0
|
same-strand
|
Response regulator receiver domain
|
5
|
PF02518.28
|
0.89
|
8
|
1294.5
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
6
|
PF00512.27
|
0.89
|
8
|
1294.5
|
same-strand
|
His Kinase A (phospho-acceptor) domain
|
7
|
PF00672.27
|
0.89
|
8
|
1294.5
|
same-strand
|
HAMP domain
|
8
|
PF18801.3
|
1.0
|
9
|
-16
|
same-strand
|
response regulator aspartate phosphatase H, N terminal
|
9
|
PF13424.8
|
1.0
|
9
|
-16
|
same-strand
|
Tetratricopeptide repeat
|
10
|
PF07719.19
|
0.67
|
6
|
-16.0
|
same-strand
|
Tetratricopeptide repeat
|
11
|
PF13181.8
|
0.78
|
7
|
-16
|
same-strand
|
Tetratricopeptide repeat
|
12
|
PF13174.8
|
0.89
|
8
|
-16.0
|
same-strand
|
Tetratricopeptide repeat
|
13
|
PF09680.12
|
0.78
|
7
|
105
|
opposite-strand
|
Family of unknown function
|
14
|
PF00696.30
|
1.0
|
9
|
373
|
opposite-strand
|
Amino acid kinase family
|
15
|
PF13840.8
|
1.0
|
9
|
373
|
opposite-strand
|
ACT domain
|
16
|
PF01032.20
|
1.0
|
9
|
2701.5
|
same-strand
|
FecCD transport family
|
17
|
PF13432.8
|
0.78
|
7
|
-16
|
same-strand
|
Tetratricopeptide repeat
|
++ More..