Result : P94373
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Negative regulatory protein YxlE |
| NCBI Accession ID | D83026.1 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 54274 |
| Right | 54462 |
| Strand | + |
| Nucleotide Sequence | ATGAATATTTCTTGGGAAATGATTTTGCCGCTGATTGTATTACAGCTGGCTTTGGCGGTGTTTGCCCTTATCAGCTGTATAAAAGAAGAGCGGACGAACGGGCCAAAGTGGATGTGGGCTGCAATCATCGTATGTATCAATATTATCGGGCCGATTTTATTTTTCACCGTCGGCAGAAAGCAAAGGTAA |
| Sequence | MNISWEMILPLIVLQLALAVFALISCIKEERTNGPKWMWAAIIVCINIIGPILFFTVGRKQR |
| Source of smORF | Swiss-Prot |
| Function | Together with YxlD is important for negative regulation of sigma Y activity. {ECO:0000269|Pubmed:12897008}. |
| Pubmed ID | 8969509 9384377 12897008 14769884 |
| Domain | CDD:404302 |
| Functional Category | Others |
| Uniprot ID | P94373 |
| ORF Length (Amino Acid) | 62 |
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| Conservation Analysis |
No. of Species: 41
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3969611 | 3969799 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 2 | 3797039 | 3797227 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 3 | 3857297 | 3857485 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 4 | 3790966 | 3791154 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 5 | 3854250 | 3854438 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 6 | 3784581 | 3784769 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 7 | 2266983 | 2267171 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 8 | 21351 | 21539 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 9 | 2847713 | 2847886 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 10 | 1848780 | 1848983 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 11 | 24702 | 24902 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 12 | 3930552 | 3930719 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 13 | 2987532 | 2987696 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 14 | 4135555 | 4135722 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 15 | 3051747 | 3051926 | - | NZ_CP019401.1 | Planococcus faecalis |
| 16 | 2881509 | 2881685 | - | NZ_CP016540.2 | Planococcus versutus |
| 17 | 2222532 | 2222711 | + | NZ_CP013661.2 | Planococcus kocurii |
| 18 | 2063201 | 2063359 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 19 | 6579494 | 6579646 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 20 | 5997712 | 5997867 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 21 | 2316825 | 2317022 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 22 | 2878959 | 2879123 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 23 | 5934582 | 5934746 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 24 | 4494726 | 4494884 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 25 | 74817 | 75017 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 26 | 6317576 | 6317752 | - | NZ_CP034437.1 | Paenibacillus albus |
| 27 | 149438 | 149638 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 28 | 4523977 | 4524177 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 29 | 518090 | 518293 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 30 | 3277076 | 3277246 | + | NZ_CP020772.1 | Halobacillus mangrovi |
| 31 | 2606692 | 2606892 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 32 | 4702818 | 4702988 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 33 | 6791539 | 6791691 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 34 | 2161235 | 2161414 | - | NZ_CP008876.1 | Terribacillus goriensis |
| 35 | 4016630 | 4016833 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 36 | 923158 | 923328 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 37 | 2971544 | 2971708 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 38 | 6215726 | 6215896 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 39 | 130167 | 130322 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 40 | 631298 | 631456 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 41 | 2087896 | 2088087 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00005.29 | 1.0 | 41 | 0 | same-strand | ABC transporter |
| 2 | PF13732.8 | 0.95 | 39 | 0 | same-strand | Domain of unknown function (DUF4162) |
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