* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07730.15
|
0.67
|
2
|
2467.5
|
same-strand
|
Histidine kinase
|
2
|
PF00072.26
|
0.67
|
2
|
1824.5
|
same-strand
|
Response regulator receiver domain
|
3
|
PF00196.21
|
0.67
|
2
|
1824.5
|
same-strand
|
Bacterial regulatory proteins, luxR family
|
4
|
PF01546.30
|
1.0
|
3
|
560
|
same-strand
|
Peptidase family M20/M25/M40
|
5
|
PF07687.16
|
1.0
|
3
|
560
|
same-strand
|
Peptidase dimerisation domain
|
6
|
PF04525.14
|
1.0
|
3
|
175
|
same-strand
|
LURP-one-related
|
7
|
PF01717.20
|
1.0
|
3
|
1640.5
|
same-strand
|
Cobalamin-independent synthase, Catalytic domain
|
8
|
PF13561.8
|
1.0
|
3
|
3495
|
opposite-strand
|
Enoyl-(Acyl carrier protein) reductase
|
9
|
PF00106.27
|
1.0
|
3
|
3495
|
opposite-strand
|
short chain dehydrogenase
|
10
|
PF08659.12
|
1.0
|
3
|
3495
|
opposite-strand
|
KR domain
|
11
|
PF01144.25
|
1.0
|
3
|
4285
|
opposite-strand
|
Coenzyme A transferase
|
++ More..