* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_020291.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01594.18
|
1.0
|
4
|
4278.5
|
same-strand
|
AI-2E family transporter
|
2
|
PF01411.21
|
1.0
|
4
|
1071.0
|
same-strand
|
tRNA synthetases class II (A)
|
3
|
PF02272.21
|
1.0
|
4
|
1071.0
|
same-strand
|
DHHA1 domain
|
4
|
PF07973.16
|
1.0
|
4
|
1071.0
|
same-strand
|
Threonyl and Alanyl tRNA synthetase second additional domain
|
5
|
PF06135.14
|
1.0
|
4
|
674.0
|
same-strand
|
IreB regulatory phosphoprotein
|
6
|
PF03652.17
|
1.0
|
4
|
201.0
|
same-strand
|
Holliday junction resolvase
|
7
|
PF01475.21
|
1.0
|
4
|
73.5
|
same-strand
|
Ferric uptake regulator family
|
8
|
PF17770.3
|
1.0
|
4
|
608.0
|
same-strand
|
Ribonuclease J C-terminal domain
|
9
|
PF00009.29
|
1.0
|
4
|
2583.5
|
same-strand
|
Elongation factor Tu GTP binding domain
|
10
|
PF00679.26
|
1.0
|
4
|
2583.5
|
same-strand
|
Elongation factor G C-terminus
|
11
|
PF03144.27
|
1.0
|
4
|
2583.5
|
same-strand
|
Elongation factor Tu domain 2
|
12
|
PF01926.25
|
1.0
|
4
|
2583.5
|
same-strand
|
50S ribosome-binding GTPase
|
13
|
PF02618.18
|
1.0
|
4
|
4505.0
|
same-strand
|
YceG-like family
|
14
|
PF01596.19
|
1.0
|
4
|
5548.0
|
same-strand
|
O-methyltransferase
|
15
|
PF13578.8
|
1.0
|
4
|
5548.0
|
same-strand
|
Methyltransferase domain
|
16
|
PF08241.14
|
0.75
|
3
|
5539
|
same-strand
|
Methyltransferase domain
|
17
|
PF05239.18
|
0.75
|
3
|
5257
|
same-strand
|
PRC-barrel domain
|
++ More..