Result : P77714
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ferredoxin-like protein YdiT |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1782681 |
| Right | 1782974 |
| Strand | + |
| Nucleotide Sequence | ATGAGCCAGAACGCTACGGTTAACGTCGACATCAAATTAGGCGTCAATAAATTCCATGTTGATGAGGGCCACCCGCATATCATTCTGGCGGAAAATCCCGATATCAATGAATTCCATAAATTAATGAAAGCCTGCCCTGCCGGACTTTATAAGCAGGATGACGCAGGAAACATTCATTTTGATTCCGCCGGTTGTCTGGAGTGCGGCACCTGTCGGGTGCTGTGCGGTAACACTATTCTCGAACAGTGGCAATATCCCGCAGGCACCTTCGGTATTGATTTTCGCTACGGCTAA |
| Sequence | MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG |
| Source of smORF | Swiss-Prot |
| Function | Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with YdiQ, YdiR and YdiS. |
| Pubmed ID | 9097039 9278503 16738553 |
| Domain | CDD:418523 |
| Functional Category | Metal-binding |
| Uniprot ID | P77714 |
| ORF Length (Amino Acid) | 97 |
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| Conservation Analysis |
No. of Species: 66
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1782681 | 1782974 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 45481 | 45750 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2382532 | 2382825 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 49895 | 50164 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1973515 | 1973808 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 3550169 | 3550438 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 1564033 | 1564326 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 8 | 44795 | 45064 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 9 | 1717352 | 1717645 | + | NZ_AP014857.1 | Escherichia albertii |
| 10 | 48749 | 49018 | + | NZ_AP014857.1 | Escherichia albertii |
| 11 | 3113353 | 3113610 | - | NZ_AP014857.1 | Escherichia albertii |
| 12 | 4840349 | 4840642 | - | NZ_CP033744.1 | Citrobacter freundii |
| 13 | 3486692 | 3486961 | + | NZ_CP033744.1 | Citrobacter freundii |
| 14 | 229884 | 230177 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 1567498 | 1567734 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 16 | 692938 | 693231 | - | NZ_CP038469.1 | Citrobacter tructae |
| 17 | 2632028 | 2632264 | - | NZ_CP038469.1 | Citrobacter tructae |
| 18 | 3410107 | 3410400 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 19 | 4854554 | 4854823 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 20 | 3589037 | 3589330 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 21 | 2270010 | 2270297 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 22 | 1431911 | 1432204 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 23 | 91795 | 92031 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 24 | 3141031 | 3141324 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 25 | 3094519 | 3094812 | - | NZ_CP011254.1 | Serratia fonticola |
| 26 | 226027 | 226320 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 27 | 34524 | 34808 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 28 | 1604746 | 1605039 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 29 | 914978 | 915271 | + | NZ_CP025799.1 | Dickeya zeae |
| 30 | 4909375 | 4909662 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 31 | 261162 | 261449 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 32 | 3925914 | 3926201 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 33 | 3173209 | 3173466 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 34 | 5170156 | 5170419 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 35 | 4165754 | 4166041 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 36 | 438673 | 438924 | + | NZ_CP046378.1 | Shewanella algae |
| 37 | 434131 | 434367 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 38 | 3814618 | 3814854 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 39 | 1737230 | 1737466 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 40 | 5088654 | 5088890 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 41 | 2649300 | 2649536 | + | NZ_LS483470.1 | Leminorella richardii |
| 42 | 2622527 | 2622763 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 43 | 2818208 | 2818444 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 44 | 2735225 | 2735512 | + | NZ_CP031218.1 | Malaciobacter halophilus |
| 45 | 4023701 | 4023964 | + | NZ_CP050150.1 | Hafnia alvei |
| 46 | 2832908 | 2833195 | + | NZ_CP032101.1 | Malaciobacter marinus |
| 47 | 3402778 | 3403062 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 48 | 3416879 | 3417166 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 49 | 734184 | 734471 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 50 | 56749 | 57018 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 51 | 2854252 | 2854539 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 52 | 3107860 | 3108096 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 53 | 1003380 | 1003664 | - | NZ_CP026364.1 | Proteus hauseri |
| 54 | 1017654 | 1017911 | - | NZ_CP026364.1 | Proteus hauseri |
| 55 | 2677250 | 2677486 | + | NZ_CP053416.1 | Salmonella bongori |
| 56 | 902395 | 902670 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 57 | 2600299 | 2600586 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 58 | 47320 | 47631 | + | NZ_CP040882.1 | Sutterella faecalis |
| 59 | 782741 | 782977 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 60 | 670157 | 670426 | + | NZ_LR134340.1 | Escherichia marmotae |
| 61 | 45031 | 45318 | + | NZ_CP029736.1 | Providencia rettgeri |
| 62 | 970528 | 970815 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 63 | 158480 | 158767 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 64 | 3587547 | 3587816 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 65 | 1123929 | 1124216 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 66 | 352588 | 352827 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 67 | 2142419 | 2142655 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 68 | 839743 | 840012 | - | NZ_LS483422.1 | Providencia heimbachae |
| 69 | 3415067 | 3415303 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 70 | 2898550 | 2898807 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 71 | 2169108 | 2169344 | + | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 72 | 2141679 | 2141915 | - | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 73 | 3613575 | 3613811 | + | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 74 | 376860 | 377123 | + | NZ_CP012547.1 | Campylobacter pinnipediorum subsp. pinnipediorum |
| 75 | 1945364 | 1945645 | - | NZ_CP012543.1 | Campylobacter rectus |
| 76 | 1571886 | 1572137 | - | NZ_CP009302.1 | Berryella intestinalis |
| 77 | 617612 | 617896 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 78 | 2217478 | 2217765 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 79 | 955240 | 955515 | + | NZ_LR134379.1 | Slackia heliotrinireducens |
| 80 | 2969219 | 2969467 | + | NZ_LR134379.1 | Slackia heliotrinireducens |
| 81 | 1005274 | 1005582 | - | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 82 | 1434240 | 1434476 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 83 | 128879 | 129157 | + | NZ_LR778174.1 | Veillonella parvula |
| 84 | 652324 | 652578 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 85 | 649463 | 649744 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 86 | 142088 | 142360 | + | NZ_LT906470.1 | Veillonella rodentium |
| 87 | 2782612 | 2782884 | - | NC_022567.1 | Adlercreutzia equolifaciens DSM 19450 |
| 88 | 1109972 | 1110220 | + | NZ_CP011402.1 | Denitrobacterium detoxificans |
| 89 | 439554 | 439844 | + | NZ_CP036259.1 | Sporomusa termitida |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01012.23 | 0.94 | 62 | 2265.0 | same-strand | Electron transfer flavoprotein domain |
| 2 | PF00766.21 | 0.94 | 62 | 1352 | same-strand | Electron transfer flavoprotein FAD-binding domain |
| 3 | PF00441.26 | 0.8 | 53 | 5041.0 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 4 | PF02770.21 | 0.8 | 53 | 5057 | opposite-strand | Acyl-CoA dehydrogenase, middle domain |
| 5 | PF08028.13 | 0.8 | 53 | 5041.0 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 6 | PF02771.18 | 0.8 | 53 | 5059.5 | opposite-strand | Acyl-CoA dehydrogenase, N-terminal domain |
| 7 | PF02028.19 | 0.64 | 42 | 3664 | opposite-strand | BCCT, betaine/carnitine/choline family transporter |
| 8 | PF00083.26 | 0.64 | 42 | 111 | same-strand | Sugar (and other) transporter |
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