Result : P77295
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Probable HTH-type transcriptional regulator YgaV |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 2797211 |
| Right | 2797510 |
| Strand | + |
| Nucleotide Sequence | ATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCATTCTATATTCCATTAAAAATGAGGCGGTAAATGCCATTATCGCCACCCTGAAAAATGTCTATTGTCCGTAA |
| Sequence | MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP |
| Source of smORF | Swiss-Prot |
| Function | Functions as transcription repressor. {ECO:0000305|Pubmed:18245262}. |
| Pubmed ID | 9205837 9278503 16738553 18245262 |
| Domain | CDD:419669 |
| Functional Category | DNA-binding |
| Uniprot ID | P77295 |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 78
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3948775 | 3949074 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 2797211 | 2797510 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 961703 | 962002 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 2771105 | 2771404 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 3519525 | 3519824 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 3285125 | 3285424 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 2737298 | 2737597 | + | NZ_AP014857.1 | Escherichia albertii |
| 8 | 2946045 | 2946344 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 4485369 | 4485668 | - | NZ_CP038469.1 | Citrobacter tructae |
| 10 | 3551032 | 3551331 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 1695278 | 1695577 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 12 | 770703 | 771002 | + | NZ_CP053416.1 | Salmonella bongori |
| 13 | 3307531 | 3307830 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 14 | 1589479 | 1589778 | + | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 38277 | 38576 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 16 | 3639843 | 3640142 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 17 | 3635499 | 3635798 | + | NC_015968.1 | Enterobacter soli |
| 18 | 4740268 | 4740567 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 19 | 3647851 | 3648150 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 20 | 3936935 | 3937234 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 21 | 3630077 | 3630376 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 22 | 4748454 | 4748753 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 23 | 1043678 | 1043923 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 24 | 1121584 | 1121883 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 25 | 1275604 | 1275903 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 26 | 1380750 | 1380998 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 27 | 1205404 | 1205703 | - | NZ_CP050508.1 | Raoultella terrigena |
| 28 | 1235955 | 1236260 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 29 | 1075396 | 1075644 | - | NZ_CP041247.1 | Raoultella electrica |
| 30 | 3995192 | 3995437 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 31 | 1144513 | 1144812 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 32 | 4103276 | 4103575 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 33 | 533901 | 534200 | + | NZ_CP026047.1 | Raoultella planticola |
| 34 | 1187082 | 1187333 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 35 | 4251627 | 4251872 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 36 | 4219641 | 4219886 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 37 | 2332602 | 2332910 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 38 | 2823716 | 2824021 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 39 | 1147400 | 1147699 | - | NZ_CP054254.1 | Klebsiella variicola |
| 40 | 3768988 | 3769233 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 41 | 1158825 | 1159124 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 42 | 2915357 | 2915662 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 43 | 2652187 | 2652492 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 44 | 1223418 | 1223723 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 45 | 122515 | 122763 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 46 | 2678842 | 2679123 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 47 | 2205706 | 2206011 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 48 | 1420975 | 1421226 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 49 | 290580 | 290831 | + | NZ_CP011254.1 | Serratia fonticola |
| 50 | 822915 | 823166 | - | NZ_LR134201.1 | Cedecea lapagei |
| 51 | 2505218 | 2505469 | + | NZ_CP067057.1 | Rahnella aceris |
| 52 | 3046632 | 3046883 | - | NZ_CP065534.1 | Lonsdalea populi |
| 53 | 5131179 | 5131496 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 54 | 549307 | 549615 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 55 | 18416 | 18667 | - | NZ_CP045721.1 | Pantoea eucalypti |
| 56 | 2767851 | 2768141 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 57 | 1080868 | 1081116 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 58 | 824722 | 825024 | - | NZ_CP023525.1 | Cedecea neteri |
| 59 | 1409354 | 1409614 | - | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 60 | 3102642 | 3102902 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 61 | 326654 | 326905 | - | NZ_CP027860.1 | Ahniella affigens |
| 62 | 2269971 | 2270240 | + | NZ_CP022048.2 | Brevundimonas vesicularis |
| 63 | 2001671 | 2001931 | - | NZ_CP031555.1 | Thalassospira indica |
| 64 | 1322202 | 1322465 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 65 | 3407397 | 3407678 | + | NC_010170.1 | Bordetella petrii |
| 66 | 3868461 | 3868709 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 67 | 1253974 | 1254222 | + | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 68 | 2351761 | 2352042 | - | NZ_CP027792.1 | Pulveribacter suum |
| 69 | 3150258 | 3150500 | + | NZ_CP020906.1 | Rhizobium etli |
| 70 | 2916009 | 2916251 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 71 | 1225669 | 1225911 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 72 | 4014384 | 4014626 | - | NZ_CP054021.1 | Rhizobium indicum |
| 73 | 3674723 | 3674965 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 74 | 3191919 | 3192161 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 75 | 3292101 | 3292343 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 76 | 3290687 | 3290929 | + | NZ_CP071604.1 | Rhizobium binae |
| 77 | 2701931 | 2702191 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 78 | 590914 | 591156 | + | NZ_CP071454.1 | Rhizobium lentis |
| 79 | 3276539 | 3276781 | + | NZ_CP013500.1 | Rhizobium esperanzae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00581.22 | 0.77 | 60 | 10 | same-strand | Rhodanese-like domain |
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