Result : A6B4U8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA base-flipping protein (Alkyltransferase-like protein ATL) (vpAtl) |
| NCBI Accession ID | AAWQ01000051.1 |
| Organism | Vibrio parahaemolyticus serotype O3:K6 (strain AQ3810) |
| Left | 13970 |
| Right | 14272 |
| Strand | + |
| Nucleotide Sequence | ATGGACCAATTTTTAGTGCAAATCTTTGCTGTAATTCACCAAATTCCAAAAGGAAAAGTATCGACCTACGGCGAAATTGCCAAAATGGCAGGCTATCCAGGATACGCCAGACACGTAGGAAAAGCTCTTGGGAATTTGCCAGAAGGTAGCAAATTGCCTTGGTTTCGAGTCATCAATAGTCAAGGGAAGATATCGCTGAAAGGCAGAGACTTAGACAGGCAAAAGCAGAAATTAGAAGCTGAAGGGATCGAAGTGTCTGAGATAGGAAAAATCGCCCTCAGAAAATACAAATGGCAGCCTTAG |
| Sequence | MDQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEAEGIEVSEIGKIALRKYKWQP |
| Source of smORF | Swiss-Prot |
| Function | Involved in DNA damage recognition. Binds DNA containing O(6)-methylguanine (Pubmed:20212037). Binds to the damaged base and flips the base out of the DNA duplex into an extrahelical conformation, which allows processing by repair proteins (By similarity). {ECO:0000250|UniProtKB:P0AFP2, ECO:0000269|Pubmed:20212037}. |
| Pubmed ID | 20212037 |
| Domain | CDD:421847 |
| Functional Category | DNA-binding |
| Uniprot ID | A6B4U8 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 182
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2270197 | 2270499 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 2 | 1932707 | 1933009 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 3 | 1238268 | 1238570 | - | NZ_CP009467.1 | Vibrio harveyi |
| 4 | 956115 | 956417 | - | NZ_CP030788.1 | Vibrio campbellii |
| 5 | 831504 | 831806 | + | NZ_CP019959.1 | Vibrio owensii |
| 6 | 2075619 | 2075921 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 7 | 1219419 | 1219721 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 8 | 2663635 | 2663937 | + | NC_013456.1 | Vibrio antiquarius |
| 9 | 981971 | 982273 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 10 | 1783840 | 1784142 | + | NZ_AP019657.1 | Vibrio ponticus |
| 11 | 678762 | 679064 | - | NZ_CP035688.1 | Vibrio metoecus |
| 12 | 2159530 | 2159832 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 13 | 1861549 | 1861851 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 14 | 981394 | 981696 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 15 | 691574 | 691876 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 16 | 1131171 | 1131473 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 17 | 2052104 | 2052406 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 18 | 2634915 | 2635217 | + | NZ_CP040990.1 | Vibrio furnissii |
| 19 | 2048934 | 2049236 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 20 | 1865018 | 1865320 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 21 | 2316326 | 2316628 | + | NC_011753.2 | Vibrio atlanticus |
| 22 | 2282642 | 2282944 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 23 | 1046932 | 1047234 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 24 | 2477396 | 2477698 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 25 | 1036285 | 1036596 | - | NZ_AP014635.1 | Vibrio tritonius |
| 26 | 1248760 | 1249041 | - | NZ_CP046268.1 | Vibrio spartinae |
| 27 | 2166207 | 2166512 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 28 | 1070124 | 1070477 | - | NZ_CP033078.1 | Vibrio zhugei |
| 29 | 1133745 | 1134047 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 30 | 860421 | 860726 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 31 | 2542941 | 2543246 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 32 | 1534242 | 1534544 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 33 | 761140 | 761442 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 34 | 1227908 | 1228213 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 35 | 2195222 | 2195533 | - | NZ_CP014056.2 | Grimontia hollisae |
| 36 | 1194923 | 1195174 | - | NZ_LS483470.1 | Leminorella richardii |
| 37 | 1200978 | 1201289 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 38 | 1229058 | 1229336 | - | NZ_CP061511.1 | Mixta calida |
| 39 | 471966 | 472274 | - | NZ_CP028271.1 | Mixta intestinalis |
| 40 | 3455606 | 3455893 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 41 | 3452498 | 3452803 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 42 | 3434336 | 3434584 | + | NZ_CP043727.1 | Yersinia canariae |
| 43 | 2879582 | 2879830 | + | NZ_CP032487.1 | Yersinia hibernica |
| 44 | 368904 | 369185 | + | NZ_CP019706.1 | Pantoea alhagi |
| 45 | 1160676 | 1161011 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 46 | 1037107 | 1037442 | - | NC_015968.1 | Enterobacter soli |
| 47 | 2407959 | 2408273 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 48 | 1140200 | 1140445 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 49 | 569662 | 569973 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 50 | 3936610 | 3936879 | - | NZ_CP049115.1 | Pantoea stewartii |
| 51 | 1041908 | 1042177 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 52 | 3464431 | 3464742 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 53 | 2173708 | 2173953 | + | NZ_CP038469.1 | Citrobacter tructae |
| 54 | 4051582 | 4051854 | - | NZ_CP009787.1 | Yersinia rohdei |
| 55 | 3519130 | 3519411 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 56 | 1516078 | 1516359 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 57 | 1119762 | 1120010 | - | NZ_CP046293.1 | Yersinia intermedia |
| 58 | 4084695 | 4085006 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 59 | 1093041 | 1093322 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 60 | 1107659 | 1107907 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 61 | 3501381 | 3501665 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 62 | 1120860 | 1121171 | - | NZ_LR134340.1 | Escherichia marmotae |
| 63 | 3445756 | 3446067 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 64 | 1301163 | 1301471 | - | NZ_CP026377.1 | Mixta gaviniae |
| 65 | 1116267 | 1116512 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 66 | 1217305 | 1217574 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 67 | 1022801 | 1023076 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 68 | 1134354 | 1134665 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 69 | 1016576 | 1016887 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 70 | 2485095 | 2485364 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 71 | 542048 | 542359 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 72 | 1466608 | 1466877 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 73 | 3237834 | 3238145 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 74 | 412513 | 412824 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 75 | 475982 | 476293 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 76 | 2427055 | 2427360 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 77 | 1136905 | 1137186 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 78 | 1925070 | 1925351 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 79 | 2818129 | 2818404 | - | NZ_CP007230.1 | Yersinia similis |
| 80 | 2968202 | 2968471 | - | NZ_CP026047.1 | Raoultella planticola |
| 81 | 1611355 | 1611666 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 82 | 4452894 | 4453163 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 83 | 4276361 | 4276630 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 84 | 3777341 | 3777652 | + | NZ_CP023525.1 | Cedecea neteri |
| 85 | 3427082 | 3427393 | + | NZ_LR134201.1 | Cedecea lapagei |
| 86 | 4426964 | 4427275 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 87 | 493975 | 494286 | - | NZ_AP014857.1 | Escherichia albertii |
| 88 | 1880847 | 1881158 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 89 | 2235435 | 2235749 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 90 | 2794198 | 2794512 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 91 | 3602149 | 3602460 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 92 | 199031 | 199291 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 93 | 3393464 | 3393775 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 94 | 3050942 | 3051286 | + | NZ_CP038853.1 | Pantoea vagans |
| 95 | 2148087 | 2148407 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 96 | 2583118 | 2583438 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 97 | 1282137 | 1282382 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 98 | 4384359 | 4384670 | + | NZ_CP050508.1 | Raoultella terrigena |
| 99 | 523960 | 524271 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 100 | 1002349 | 1002660 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 101 | 4261247 | 4261516 | + | NZ_CP054254.1 | Klebsiella variicola |
| 102 | 3702769 | 3703038 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 103 | 4600469 | 4600780 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 104 | 3055434 | 3055676 | - | NZ_CP053416.1 | Salmonella bongori |
| 105 | 3008901 | 3009212 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 106 | 3993497 | 3993766 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 107 | 4040676 | 4040945 | + | NZ_CP041247.1 | Raoultella electrica |
| 108 | 4112839 | 4113150 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 109 | 1134748 | 1135059 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 110 | 2302042 | 2302353 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 111 | 4679803 | 4680114 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 112 | 2375392 | 2375700 | + | NZ_CP067057.1 | Rahnella aceris |
| 113 | 1091203 | 1091472 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 114 | 3376974 | 3377249 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 115 | 1080384 | 1080632 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 116 | 2112749 | 2113051 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 117 | 1137511 | 1137822 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 118 | 2900372 | 2900683 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 119 | 3977996 | 3978307 | - | NZ_CP033744.1 | Citrobacter freundii |
| 120 | 3969303 | 3969617 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 121 | 2821046 | 2821366 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 122 | 3115846 | 3116163 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 123 | 1387443 | 1387763 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 124 | 2685073 | 2685384 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 125 | 1301329 | 1301649 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 126 | 3717889 | 3718209 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 127 | 1329374 | 1329694 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 128 | 341172 | 341492 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 129 | 3543225 | 3543545 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 130 | 135063 | 135383 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 131 | 569893 | 570213 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 132 | 3205888 | 3206208 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 133 | 4182318 | 4182629 | + | NZ_CP047241.1 | Aquitalea denitrificans |
| 134 | 2919870 | 2920178 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 135 | 4741096 | 4741344 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 136 | 2627201 | 2627446 | - | NZ_CP065640.1 | Serratia rubidaea |
| 137 | 2953165 | 2953410 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 138 | 1213526 | 1213795 | - | NZ_LT906479.1 | Serratia ficaria |
| 139 | 4865048 | 4865293 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 140 | 3436612 | 3436902 | - | NZ_AP014630.1 | Acinetobacter guillouiae |
| 141 | 439077 | 439394 | - | NZ_CP072426.1 | Pseudoalteromonas viridis |
| 142 | 1345364 | 1345675 | - | NZ_CP039731.1 | Aquitalea aquatilis |
| 143 | 733013 | 733345 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 144 | 1395931 | 1396203 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 145 | 890948 | 891229 | - | NZ_CP009889.1 | Pseudoalteromonas piratica |
| 146 | 2619548 | 2619871 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 147 | 3250960 | 3251229 | - | NZ_CP011254.1 | Serratia fonticola |
| 148 | 422722 | 422991 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 149 | 1151491 | 1151763 | - | NZ_LR134494.1 | Serratia quinivorans |
| 150 | 1135016 | 1135288 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 151 | 3103551 | 3103799 | + | NZ_CP036422.1 | Halioglobus maricola |
| 152 | 2203971 | 2204234 | - | NZ_CP020472.1 | Shewanella japonica |
| 153 | 1793728 | 1794039 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 154 | 2288100 | 2288459 | + | NZ_CP072793.1 | Thiothrix unzii |
| 155 | 1625827 | 1626111 | + | NZ_CP012808.1 | Acinetobacter equi |
| 156 | 486319 | 486618 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 157 | 2013354 | 2013680 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 158 | 1027774 | 1028052 | + | NZ_CP032134.1 | Acinetobacter chinensis |
| 159 | 1314411 | 1314710 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 160 | 2437430 | 2437756 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 161 | 2851261 | 2851539 | + | NZ_CP040105.1 | Acinetobacter nosocomialis M2 |
| 162 | 858656 | 858973 | + | NZ_CP065820.1 | Acinetobacter seifertii |
| 163 | 1602201 | 1602470 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 164 | 821537 | 821806 | + | NZ_CP053391.1 | Acinetobacter lactucae |
| 165 | 824756 | 825025 | + | NC_014259.1 | Acinetobacter oleivorans DR1 |
| 166 | 2423649 | 2423948 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 167 | 2392294 | 2392611 | - | NZ_CP024632.1 | Acinetobacter junii |
| 168 | 2088965 | 2089264 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 169 | 2419299 | 2419619 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 170 | 3116120 | 3116380 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 171 | 1637823 | 1638143 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 172 | 804954 | 805223 | + | NZ_CP015121.1 | Acinetobacter baumannii |
| 173 | 2781440 | 2781709 | + | NZ_CP070518.1 | Acinetobacter calcoaceticus |
| 174 | 1712140 | 1712433 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 175 | 2834248 | 2834529 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 176 | 2313802 | 2314071 | - | NC_016603.1 | Acinetobacter pittii PHEA-2 |
| 177 | 1259356 | 1259610 | - | NZ_LR134531.1 | Pragia fontium |
| 178 | 4898420 | 4898695 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 179 | 2083471 | 2083782 | - | NZ_CP061081.1 | Marinomonas arctica |
| 180 | 2058047 | 2058346 | + | NZ_CP037951.1 | Parashewanella tropica |
| 181 | 3250897 | 3251199 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 182 | 2287507 | 2287815 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 183 | 939332 | 939628 | - | NZ_CP051183.1 | Bermanella marisrubri |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP031781.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09619.12 | 0.74 | 134 | 33 | opposite-strand | Type III secretion system lipoprotein chaperone (YscW) |
| 2 | PF13622.8 | 0.78 | 142 | 791 | same-strand | Thioesterase-like superfamily |
| 3 | PF02551.17 | 0.78 | 142 | 791 | same-strand | Acyl-CoA thioesterase |
++ More..