Result : P76275
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YebW |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1922121 |
| Right | 1922312 |
| Strand | + |
| Nucleotide Sequence | ATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTTGTGAAGATATTGTTGTGGATGTCTACAACACGGAACAGCAGTGTCTTTATTCTATGAGCGATCAACGGATCCGCCAGGGCGGTTGTTTTCCGATTGAGGATTTTATAGATGGTTTCTGGCGACCTGCACAGGAGTACGGTGATTTTTAA |
| Sequence | MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam07358. Profile Description: Protein of unknown function (DUF1482). This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown. |
| Pubmed ID | 9278503 16738553 |
| Domain | CDD:369331 |
| Functional Category | Others |
| Uniprot ID | P76275 |
| ORF Length (Amino Acid) | 63 |
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| Conservation Analysis |
No. of Species: 85
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1922121 | 1922312 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 223972 | 224163 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 2524089 | 2524280 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1795438 | 1795629 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 1427222 | 1427413 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 1927815 | 1928006 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 4462195 | 4462386 | + | NZ_CP053416.1 | Salmonella bongori |
| 8 | 1950476 | 1950667 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 1855049 | 1855240 | + | NZ_AP014857.1 | Escherichia albertii |
| 10 | 1998464 | 1998655 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 11 | 1103015 | 1103206 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 1998284 | 1998475 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 13 | 2775297 | 2775488 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 14 | 2527042 | 2527233 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 15 | 4167303 | 4167494 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 16 | 2609153 | 2609344 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 17 | 248527 | 248718 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 18 | 1450615 | 1450806 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 19 | 1784482 | 1784673 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 20 | 2051148 | 2051339 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 21 | 3781746 | 3781937 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 22 | 1952910 | 1953101 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 23 | 2567926 | 2568117 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 24 | 2866073 | 2866264 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 25 | 882543 | 882734 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 26 | 1617446 | 1617637 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 27 | 109775 | 109966 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 28 | 2553271 | 2553462 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 29 | 575878 | 576069 | + | NZ_CP033744.1 | Citrobacter freundii |
| 30 | 1976644 | 1976835 | - | NZ_CP041247.1 | Raoultella electrica |
| 31 | 2091456 | 2091647 | - | NZ_CP050508.1 | Raoultella terrigena |
| 32 | 1903403 | 1903594 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 33 | 1866580 | 1866771 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 34 | 3350645 | 3350836 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 35 | 1934598 | 1934789 | - | NZ_CP054254.1 | Klebsiella variicola |
| 36 | 5226146 | 5226337 | + | NZ_CP026047.1 | Raoultella planticola |
| 37 | 1559979 | 1560170 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 38 | 3525840 | 3526031 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 39 | 2211990 | 2212181 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 40 | 2995290 | 2995481 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 41 | 4507480 | 4507671 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 42 | 1380824 | 1381015 | + | NZ_CP038469.1 | Citrobacter tructae |
| 43 | 2238412 | 2238603 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 44 | 1886595 | 1886786 | - | NZ_CP023525.1 | Cedecea neteri |
| 45 | 2329335 | 2329526 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 46 | 1867560 | 1867751 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 47 | 4074260 | 4074451 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 48 | 4273166 | 4273357 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 49 | 1812546 | 1812737 | - | NZ_LR134201.1 | Cedecea lapagei |
| 50 | 1978704 | 1978895 | + | NZ_CP065534.1 | Lonsdalea populi |
| 51 | 3221090 | 3221281 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 52 | 3776100 | 3776291 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 53 | 5304820 | 5305011 | + | NZ_CP011254.1 | Serratia fonticola |
| 54 | 2068571 | 2068762 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 55 | 2588021 | 2588212 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 56 | 2250409 | 2250600 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 57 | 2297363 | 2297554 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 58 | 2183011 | 2183202 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 59 | 1834202 | 1834393 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 60 | 1953640 | 1953831 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 61 | 2606829 | 2607020 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 62 | 2700636 | 2700827 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 63 | 990089 | 990280 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 64 | 3972697 | 3972888 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 65 | 5034765 | 5034956 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 66 | 3103709 | 3103900 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 67 | 3110724 | 3110915 | + | NZ_LR134494.1 | Serratia quinivorans |
| 68 | 3115888 | 3116079 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 69 | 3030050 | 3030241 | + | NZ_LT906479.1 | Serratia ficaria |
| 70 | 4387759 | 4387950 | + | NZ_CP065640.1 | Serratia rubidaea |
| 71 | 3005288 | 3005479 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 72 | 2302592 | 2302783 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 73 | 2094435 | 2094626 | - | NZ_CP071320.1 | Serratia ureilytica |
| 74 | 1938562 | 1938753 | + | NZ_CP067057.1 | Rahnella aceris |
| 75 | 2466143 | 2466343 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 76 | 2687096 | 2687287 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 77 | 2098422 | 2098613 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 78 | 2662326 | 2662517 | + | NZ_CP025799.1 | Dickeya zeae |
| 79 | 25153 | 25344 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 80 | 2730081 | 2730272 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 81 | 4905562 | 4905753 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 82 | 4086972 | 4087169 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 83 | 2444610 | 2444810 | + | NZ_CP061511.1 | Mixta calida |
| 84 | 1891677 | 1891868 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 85 | 2575207 | 2575401 | + | NZ_LT615367.1 | Dickeya aquatica |
| 86 | 1808429 | 1808620 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13185.8 | 0.69 | 59 | 5976.0 | opposite-strand | GAF domain |
| 2 | PF01590.28 | 0.61 | 52 | 5952 | opposite-strand | GAF domain |
| 3 | PF04403.15 | 0.8 | 68 | 4572 | same-strand | Paraquat-inducible protein A |
| 4 | PF02470.22 | 0.81 | 69 | 1972.5 | same-strand | MlaD protein |
| 5 | PF01189.19 | 0.86 | 73 | 453.0 | same-strand | 16S rRNA methyltransferase RsmB/F |
| 6 | PF17125.7 | 0.86 | 73 | 453.0 | same-strand | N-terminal domain of 16S rRNA methyltransferase RsmF |
| 7 | PF13636.8 | 0.84 | 71 | 453.0 | same-strand | RNA-binding PUA-like domain of methyltransferase RsmF |
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